Tartrazine clears live cells while preserving viability at high refractive indices and osmolality
Xuandi HouiD, Sa CaiiD, Han CuiiD, Zhongyu LiuiD, Su ZhaoiD, Ling-Yi ZhangiD, Ani BaghdasaryaniD, Victoria Crunkleton, Mark L. BrongersmaiD, Guosong HongiD
Abstract
Tissue-clearing techniques have transformed optical imaging of fixed specimens, yet their application to living systems remains limited by toxicity and removal of key tissue components. We recently demonstrated that absorbing molecules such as tartrazine can reversibly render live mouse skin transparent. Subsequently, it was reported that isotonic protein solutions can achieve ex vivo and in vivo cellular clearing. However, discrepancies remain regarding the optimal refractive index (RI) for live-cell clearing and the impact of elevated osmolality on cell viability. Here, using cultured mammalian cells, we systematically examine the dependence of optical contrast on medium RI and the effects of hyperosmolality. We find that, contrary to the recent report of an optimal RI of 1.36[~]1.37 for suspended cells, densely-packed adherent cells exhibit a monotonic decrease in phase contrast up to an RI of 1.41 with tartrazine. Moreover, even under highly hyperosmotic conditions ([~]1200 mOsm/kg), cultured cells exhibit minimal deformation and negligible loss of viability for up to 30 min in the clearing solution. These results demonstrate that tartrazine enables effective live-cell clearing at RI up to 1.41 while preserving viability under elevated osmolality, and motivate future studies to define optimal conditions for in vivo optical clearing. Graphical Abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=44 SRC="FIGDIR/small/717314v1_ufig1.gif" ALT="Figure 1"> View larger version (17K): org.highwire.dtl.DTLVardef@1ec9fbforg.highwire.dtl.DTLVardef@1ebe9e6org.highwire.dtl.DTLVardef@1492c3corg.highwire.dtl.DTLVardef@f75559_HPS_FORMAT_FIGEXP M_FIG C_FIG
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 2
- FWCI
- 5.48
- Field percentile
- top 4%
- Organism
- Assay
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Transient optical clearing using absorbing molecules for ex-vivo and in-vivo imaging
Muhammad Waqas Shabbir, Matthew Phillips, … Zihao Ou·Journal of Visualized ExperimentsPeer-reviewed·Jul 11, 2025
- Isotonic tartrazine is sufficient to improve transscleral penetration of optical coherence tomography
Rahul M. Dhodapkar·bioRxiv·Nov 17, 2025
- Isotonic and minimally invasive optical clearing media for live cell imaging ex vivo and in vivo
Shigenori Inagaki, Nao Nakagawa-Tamagawa, … Takeshi Imai·Nature MethodsPeer-reviewed·Mar 12, 2026
- Holotomography: refractive index as an intrinsic imaging contrast for 3-D label-free live cell imaging
Doyeon Kim, SangYun Lee, … YongKeun Park·bioRxiv·Nov 15, 2018
- White and Clearing: New Optical Tissue Clearing Method
Vicente Llorente, Elena Fernandez-Cortes, … María Victoria Gómez‐Gaviro·bioRxiv·Jan 30, 2025
- Rapid clearing of biological organs by using phosphoric acid, a hydrophilic solution with high refractive index
Masakazu Umezawa, Shinsuke Haruguchi, … Kohei Soga·bioRxiv·Oct 24, 2018