bioRxivBiochemistry
GelBox: Open-source software to improve rigor and reproducibility when analyzing gels and immunoblots
Abstract
GelBox is open-source software that was developed with the goal of enhancing rigor, reproducibility, and transparency when analyzing gels and immunoblots. It combines image adjustments (cropping, rotation, brightness, and contrast), background correction, and band-fitting in a single application. Users can also associate each lane in an image with metadata (for example, sample type). GelBox data files integrate the raw data, supplied metadata, image adjustments, and band-level analyses in a single file to improve traceability. GelBox has a user-friendly interface and was developed using MATLAB. The software, installation instructions, and tutorials, are available at https://campbell-muscle-lab.github.io/GelBox/.
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Gelbox - An Interactive Simulation Tool for Gel Electrophoresis
Chaim Ophir Gingold, Shawn M. Douglas·bioRxiv·Sep 5, 2018
- Gelato streamlines reproducible and auditable assembly of Western blot figures
Maria A. Pirozhkova, Elisheva Babitz, Daniel Benhalevy·bioRxiv·Sep 17, 2026
- GelGenie: an AI-powered framework for gel electrophoresis image analysis
Matthew Aquilina, Nathan J. W. Wu, … Katherine E. Dunn·Nature CommunicationsPeer-reviewed·May 5, 2025
- GSLab: Open-Source Platform for Advanced Phasor Analysis in Fluorescence Microscopy
Alexander Vallmitjana, Belén Torrado, … Mihaela Balu·BioinformaticsPeer-reviewed·Mar 29, 2025
- CellTool: an open source software combining bio-image analysis and mathematical modeling
Georgi Danovski, Teodora Dyankova-Danovska, … Stoyno Stoynov·International Journal of Molecular SciencesPeer-reviewed·Nov 26, 2023
- CoolBox: a interactive genomic data explorer for Jupyter Notebook