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bioRxivSynthetic BiologyPreprint

Visual Representation of Experimental Protocols

James Scott-BrowniD, Antonis PapachristodoulouiD

PDFDOI

Abstract

Using robots to automate laboratory tasks could increase throughput and reproducibility, but requires experimental protocols to be specified in a computer-readable format. We present a new user interface (Lists of Liquids) for specifying experimental protocols by directly manipulating a diagram: rather than having to specify individual liquid handling operations, the user can simply specify that particular lists of liquids should be combined as either a Cartesian product or convolution, and the system will plan a series of liquid handling steps to achieve this. This is intended to provide a higher-level interface in order to make the creation of protocols faster and less error prone.

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