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Nucleic Acids ResearchBioinformaticsPeer-reviewed journal article

CompBio and MIRaS : A Multi-omic Analysis Platform Built on a Memory-Based Intelligence Engine

Ruteja A. BarveiD, Chad E. StoreriD, Wayne D Hoxsie, Curtis Marcum, Joshua F. McMichaeliD, Jared M. LalmansinghiD, Brittany K. SmithiD, Mark Johnson, Daniel J. Kuster, Richard D. HeadiD

PDFDOIPreprint

Abstract

As molecular and cellular technologies have advanced, the need to analyze and interpret the resulting, often vast and multi-modal, data into actionable intelligence has become a rate-limiting factor in scientific advancement. While traditional knowledgebase-pathway tools and LLM-based AI tools both provide a degree of support in data interpretation, both exhibit limitations. Presented here is the CompBio multi-omic analysis platform built upon a novel memory-based intelligence engine, MIRaS. The system is not dependent on human-curated pathway knowledgebases, can perform statistical significance analysis, does not suffer from hallucination, and produces traceable results. Furthermore, substantial effort has been placed in the computer-human knowledge transfer components of the system to enable efficient interaction, interpretation, and learning. The system has undergone years of extensive testing, validation, and evolution in omics-based research with dozens of associated publications verifying its effectiveness. A systematic assessment of CompBio and a detailed description of the MIRaS method are provided.

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