Author

Nima Shirooni

University of California, IrvineORCID 0009-0007-9959-4062Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Dylan RiffleiD· 1 shared Matthew F. RoseiD· 1 shared Pavan Sureshkumar· 1 shared Varshini Vijay· 1 shared

Activity by Year

2026-2026 · peak 1/yr

Co-Author Collaboration Network

4 top collaborators · 6 mutual co-author links

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1 shared paperBioinformatics

Dylan RiffleORCID

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1 paper

Recent·Most cited

BioinformaticsbioRxivPreprintMay 28, 2026

CARIBOU: Computational AI Research Interface for Bioinformatics, Omics, and Unifying Agents

Dylan Riffle, Nima Shirooni, Pavan Sureshkumar…·Matthew F. Rose

CARIBOU is a multi-agent AI system that autonomously performs bioinformatics analyses using HPC environments, adapting and refining workflows across datasets.

DOI 10.64898/2026.05.25.727730

bulk RNA-seqexperimental assay

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