bioRxivCell BiologyPreprint
The initiation of the wound healing program is regulated by the convergence of mechanical and epigenetic cues
T. Bhatt, A. Hegde, R. Dey, A. Ketkar, A. Pulianmackal, A. Deb, S. Rampalli, C. Jamora
Abstract
Wound healing in the skin is a complex physiological process that is a product of a cell state transition from homeostasis to repair. Mechanical cues are increasingly being recognized as important regulators of cellular reprogramming, but the mechanism by which it is translated to changes in gene expression and ultimately cellular behavior remains largely a mystery. To probe the molecular underpinnings of this phenomenon further, we used the downregulation of caspase-8 as a biomarker of a cell entering the wound-healing program. We found that the wound-induced release of tension within the epidermis leads to the alteration of gene expression via the nuclear translocation of the DNA methyltransferase 3A (DNMT3a). This enzyme then methylates promoters of genes that are known to be downregulated in response to wound stimuli as well as potentially novel players in the repair program. Overall, these findings illuminate the convergence of mechanical and epigenetic signaling modules that are important regulators of the transcriptome landscape required to initiate the tissue repair process in the differentiated layers of the epidermis. Graphical Abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=107 SRC="FIGDIR/small/463764v2_ufig1.gif" ALT="Figure 1"> View larger version (22K): org.highwire.dtl.DTLVardef@1b5b182org.highwire.dtl.DTLVardef@198e646org.highwire.dtl.DTLVardef@1361f4forg.highwire.dtl.DTLVardef@418a84_HPS_FORMAT_FIGEXP M_FIG C_FIG
- organism: mouse
- assay: DNA methylation
- assay: bulk RNA-seq
- research focus: chromatin & epigenetic regulation
- research focus: cell type annotation
- research focus: differential expression
- approach: experimental assay
- approach: statistical model
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Actin-dependent mechanotransduction controls nucleocytoplasmic partitioning of DNMT3a through ERK1/2 signaling during cutaneous wound healing
Johan Ajnabi, Binita Dam, … Colin Jamora·bioRxiv·Jan 15, 2026
- Mechanosensitive genomic enhancers potentiate the cellular response to matrix stiffness
Brian D. Cosgrove, Lexi R. Bounds, … Charles A. Gersbach·SciencePeer-reviewed·Sep 25, 2025
- M-CSF-stimulated myeloid cells can convert into epithelial cells to participate in re-epithelialization and hair follicle regeneration during skin wound healing
y. li, H. Nojeidi, … A. Ghahary·bioRxiv·Dec 17, 2021
- Angiopoietin-like 4 promotes the proliferation and migration of epidermal stem cells and contributes to the re-epithelialization of cutaneous wounds
- Piezo1-Yap1 signalling translates tissue mechanics into regenerative cell states.
Fernando Ferreira, Jaime A. Espina, … Elías H. Barriga·bioRxiv·Sep 20, 2025
- Wounding activates the HSFA1 transcription factors to promote cellular reprogramming in Arabidopsis
Duncan Coleman, Akira Iwase, … Keiko Sugimoto·The Plant CellPeer-reviewed·Apr 21, 2026