bioRxivScientific Communication & Education
A global perspective on bioinformatics training needs
M. D. Brazas, C. Brooksbank, R. C. Jimenez, S. Blackford, P. M. Palagi, J. De Las Rivas, B. F. F. Ouellette, J. Kumuthini, E. Korpelainen, F. Lewitter, C. W. G. van Gelder, N. Mulder, M. Corpas, M. V. Schneider, T. W. Tan, D. Clements, A. Davies, T. K. Attwood
Abstract
In the last decade, life-science research has become increasingly data-intensive and computational. Nevertheless, basic bioinformatics and data stewardship are still only rarely taught in life-science degree programmes, creating a widening skills gap that spans educational levels and career roles. To better understand this situation, we ran surveys to determine how the skills dearth is affecting the need for bioinformatics training worldwide. Perhaps unsurprisingly, we found that respondents wanted more short courses to help boost their expertise and confidence in data analysis and interpretation. However, it was evident that most respondents appreciated their need for training only after designing their experiments and collecting their data. This is clearly rather late in the research workflow, and suboptimal from a training perspective, as skills acquired to address a specific need at a particular time are seldom retained, engendering a cycle of low confidence in trainees. To ensure that such skill gaps do not continue to create barriers to the progress of research, we argue that universities should strive to bring their life-science curricula into the digital-data era. Meanwhile, the demand for point-of-need training in bioinformatics and data stewardship will grow. While this situation persists, international groups like GOBLET are increasing their efforts to enlarge the community of trainers and quench the global thirst for bioinformatics training.
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Bioinformatics Core Competencies for Undergraduate Life Sciences Education
Melissa A. Wilson Sayres, Charles R. Hauser, … Mark Pauley·PLoS ONEPeer-reviewed·Jun 5, 2018
- Unmet Needs for Analyzing Biological Big Data: A Survey of 704 NSF Principal Investigators
L. Barone, J. Williams, D. Micklos·bioRxiv·Feb 15, 2017
- Barriers to Integration of Bioinformatics into Undergraduate Life Sciences Education
Jason J. Williams, Jennifer C. Drew, … Mark A. Pauley·bioRxiv·Oct 19, 2017
- An integrated, modular approach to data science education in the life sciences
K. A. Dill-McFarland, S. G. Koenig, … S. J. Hallam·bioRxiv·Jul 25, 2020
- Peer teaching as bioinformatics training strategy: incentives, challenges, and benefits.
N.-T. Rahman, C. Meyer, … R. Obaid·bioRxiv·Aug 26, 2021
- Training Data: How can we best prepare instructors to teach data science in undergraduate biology and environmental science courses?
N. C. Emery, E. Crispo, … M. Aeillo-Lammens·bioRxiv·Jan 25, 2021