Torque and buckling in stretched intertwined double-helix DNAs
Abstract
We present a statistical-mechanical model for the behavior of intertwined DNAs, with a focus on their torque and extension as a function of their catenation (linking) number and applied force, as studied in magnetic tweezers experiments. Our model produces results in good agreement with available experimental data, and predicts a catenation-dependent effective twist modulus distinct from what is observed for twisted individual double-helix DNAs. We find that buckling occurs near to the point where experiments have observed a kink in the extension versus linking number, and that the subsequent \"supercoiled braid\" state corresponds to a proliferation of multiple small plectoneme structures. We predict a discontinuity in extension at the buckling transition corresponding to nucleation of the first plectoneme domain. We also find that buckling occurs for lower linking number at lower salt; the opposite trend is observed for supercoiled single DNAs.
02 /Specification & Classification
Click any tag to browse matching papers- Assay
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Nucleation of multiple buckled structures in intertwined DNA double helices
S. Brahmachari, K. H. Gunn, … J. F. Marko·bioRxiv·Sep 30, 2017
- Defect-Facilitated Buckling in Supercoiled Double-Helix DNA
S. Brahmachari, A. Dittmore, … J. F. Marko·bioRxiv·Feb 4, 2018
- Measurement of the torque in braided DNAs using a thermodynamic Maxwell relation
B. Xiao, S. Brahmachari, … J. F. Marko·bioRxiv·Feb 7, 2020
- Evidence for a Solenoid Phase of Supercoiled DNA
Andrew Dittmore, Keir C. Neuman·bioRxiv·Apr 16, 2018
- Twist-Dependent Elastic Limits and Unwinding of Tightly Bent DNA
Soumya Chandrasekhar, Emma Meyer, … Thorsten L. Schmidt·bioRxiv·Feb 14, 2024
- Torsional Mechanics of Circular DNA
Gundeep Singh, Yifeng Hong, … Michelle Dong Wang·bioRxiv·Oct 8, 2024