bioRxivDevelopmental BiologyPreprint
Bursting on a two states stochastic model for gene transcription in Drosophila embryos
Romain YvineciD, Luiz Guilherme S. da Silva, Guilherme Nery Prata, John ReinitziD, Alexandre Ferreira RamosiD
Abstract
Recent experimental data on the transcription dynamics of eve gene stripe two formation of Drosophila melanogaster embryos occurs in bursts of multiple sizes and durations. That has motivated the proposition of a transcription model having multiple ON states for the promoter of the eve gene each of them characterized by different synthesis rate. To understand the role of multiple ON states on gene transcription we approach the exact solutions for a two state stochastic model for gene transcription in D. melanogaster embryos and derive its bursting limit. Simulations based on the Gillespie algorithm at the bursting limit show the occurrence of bursts of multiple sizes and durations. Based on our theoretical approach, we interpret the aforementioned experimental data as a demonstration of the intrinsic stochasticity of the transcriptional processes in fruit fly embryos. Then, we conceive the experimental arrangement to determine when gene transcription has multiple ON promoter state in a noisy environment.
- Citations
- 3
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- A model of transcriptional bursting dynamics based on coupling between chromatin and enhancer states
Ofri Axelrod, Udi Binshtok, … David Sprinzak·bioRxiv·Nov 29, 2025
- Regulation of Transcriptional Bursting and Spatial Patterning in Early Drosophila Embryo Development
César Nieto, Zahra Vahdat, … Abhyudai Singh·bioRxiv·May 2, 2025
- Theory of transcription bursting: Stochasticity in the transcription rates
Rajamanickam Murugan·Journal of Mathematical ChemistryPeer-reviewed·Sep 11, 2020
- Multimodal transcriptional control of pattern formation in embryonic development
Nicholas C Lammers, Vahe Galstyan, … Hernán G. García·Proceedings of the National Academy of SciencesPeer-reviewed·Dec 27, 2019
- Dynamic regulation of anterior-posterior patterning genes in living Drosophila embryos
Takashi Fukaya·Current BiologyPeer-reviewed·Mar 23, 2021
- Direct simulation of a stochastically driven multi-step birth-death process
G. Gorin, L. Pachter·bioRxiv·Jan 20, 2021