METAMDB: METABOLIC ATOM MAPPING DATABASE
Abstract
AO_SCPLOWBSTRACTC_SCPLOWMetAMDB (https://metamdb.tu-bs.de/) is an open source metabolic atom mapping database, providing atom mappings for around 75000 metabolic reactions. Each atom mapping can be inspected and downloaded either as a RXN file or as a graphic in SVG format. In addition, MetAMDB offers the possibility of automatically creating atom mapping models based on user-specified metabolic networks. These models can be of any size (small to genome scale) and can subsequently be used in standard 13C metabolic flux analysis software.
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 11
- FWCI
- 0.49
- Field percentile
- top 48%
- Assay
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- md_harmonize: a Python package for atom-level harmonization of public metabolic data-bases
Huan Jin, Hunter Moseley·MetabolitesPeer-reviewed·Dec 17, 2023
- MetaNetX/MNXref - unified namespace for metabolites and biochemical reactions in the context of metabolic models
Sébastien Moretti, Van Du T. Tran, … Marco Pagni·Nucleic Acids ResearchPeer-reviewed·Oct 27, 2020
- Hierarchical Harmonization of Atom-Resolved Metabolic Re-actions Across Metabolic Databases
Huan Jin, Hunter Moseley·MetabolitesPeer-reviewed·Jun 30, 2021
- MetaNetMap: automatic mapping of metabolomic data onto metabolic networks
Coralie Muller, Juliette Audemard, … Clémence Frioux·bioRxiv·Jan 5, 2026
- ATLASx: a computational map for the exploration of biochemical space
H. Mohammadi-Peyhani, J. Hafner, … V. Hatzimanikatis·bioRxiv·Feb 17, 2021
- The CcpNmr Analysis Simulated Metabolomics Database (CASMDB): An Open-Source Collection of Metabolite Annotation Data for 1D 1H NMR-Based Metabolomics
Morgan W. Hayward, Luca G. Mureddu, … Geerten W. Vuister·Analytical ChemistryPeer-reviewed·Apr 21, 2026