De novo genome assembly of the floating-hook moss Warnstorfia fluitans
Minh-Phuong NguyeniD, Juan A. GalarzaiD, Janne J. Koskimäki, Abrar Hussain Mian, Olga Podolich, Saija H.K. Ahonen, Anna Maria Pirttilä, Kaisa Lehosmaa
Abstract
The floating-hook moss Warnstorfia fluitans is a natural species dominant in subarctic and Arctic aquatic ecosystems. It is adapted to cold, acidic, and nutrient-deficient environments and possesses great potential for bioremediation by removing contaminants from polluted water in cold climate conditions. Here, we present the first de novo genome assembly of W. fluitans generated from pooled male and female gametophytes. The assembly is 725.04 Mb, has a N50 of 193.5 kb, a BUSCO completeness of 97.6% against the Viridiplantae lineage and 82% against the Embryophyta lineage. The whole assembly has Merqury quality value of 37 and Merqury completeness of 92%. A total of 30421 protein coding genes were predicted, with 78.62% completeness by compleasm and 87% OMArk completeness against the Embryophyta lineage. Repetitive sequences comprise 56.16% of the genome. We also present here the two complete circular chloroplast genomes and a linear mitochondrial genome of W. fluitans. This genomic resource will facilitate studies of ecological adaptation and a wide range of biological and evolutionary studies in bryophytes.
02 /Specification & Classification
Click any tag to browse matching papers- Organism
- Assay
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Draft genome of the aquatic moss Fontinalis antipyretica (Fontinalaceae, Bryophyta)
Yu Jin, Linzhou Li, … Yang Liu·GigabytePeer-reviewed·Nov 16, 2020
- Chromosomal fusions shaped the genome of the greater hornwrack bryozoan (Flustra foliacea) (Linnaeus, 1758)
Helle Tessand Baalsrud, Ole K. Tørresen, … Lee Hsiang Liow·Journal of HeredityPeer-reviewed·Feb 4, 2026
- The genome assembly of the duckweed fern, Azolla caroliniana
Michael J. Song, Yanã Campos Rizzieri, … Carl J. Rothfels·Journal of HeredityPeer-reviewed·Apr 10, 2025
- Nuclear and mitochondrial genomic resources for the meltwater stonefly, Lednia tumana Ricker, 1952 (Plecoptera: Nemouridae)
Scott Hotaling, Joanna L. Kelley, David W. Weisrock·Aquatic InsectsPeer-reviewed·Aug 15, 2019
- Genome survey of the freshwater mussel Venustaconcha ellipsiformis (Bivalvia: Unionida) using a hybrid de novo assembly approach.
Sébastien Renaut, Davide Guerra, … Sophie Breton·Genome Biology and EvolutionPeer-reviewed·Jun 4, 2018
- Chromosomal assembly of the flat oyster (Ostrea edulis L.) genome as a new genetic ressource for aquaculture
Isabelle Boutet, Homère J. Alves Monteiro, … Arnaud Tanguy·bioRxiv·Jun 26, 2022