bioRxivCell Biology
Modeling cardiac fibroblast heterogeneity from human pluripotent stem cell-derived epicardial cells
I. Fernandes, S. Funakoshi, H. Hamidzada, S. Epelman, G. Keller
Abstract
Abstract (Summary) Cardiac fibroblasts play an essential role in the development of the heart and have been implicated in disease progression in the context of fibrosis and regeneration. Here, we established a simple organoid culture platform using human pluripotent stem cell-derived epicardial cells and ventricular cardiomyocytes to study cardiac fibroblasts development, maturation and heterogeneity under normal conditions and following treatment with pathological stimuli. We demonstrated that this system models the early interactions between epicardial cells and cardiomyocytes to generate a population of fibroblasts that recapitulates many aspects of fibroblast behaviour in vivo including changes associated with maturation and in response to pathological stimuli associated with cardiac injury. Using single cell transcriptomics, we show that the hPSC-derived organoid fibroblast population displays a high degree of heterogeneity that approximates the heterogeneity of populations in both the normal and diseased human heart. Additionally, we identified a unique subpopulation of fibroblasts possessing reparative features previously characterized in the hearts of model organisms. Taken together, our system recapitulates many aspects of human cardiac fibroblast specification, development and maturation providing a platform to investigate the role of these cells in human cardiovascular development and disease.
- organism: human
- assay: scRNA-seq
- research focus: cell type annotation
- research focus: clustering
- research focus: differential expression
- research focus: cell-cell communication
- approach: experimental assay
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- An innovative in vitro model for studying the biology of cardiac fibroblasts originating from the epicardium
Claudia Müller‐Sánchez, Maria Gertrudis Muniz-Banciella, … Ofelia M. Martínez-Estrada·Disease Models & MechanismsPeer-reviewed·Mar 1, 2026
- Tissue resident macrophages innately develop in a human iPSC-derived cardiac organoid model
Anna Rockel, Tobias Brunnbauer, … Philipp Wörsdörfer·bioRxiv·May 20, 2025
- Molecular and metabolomic characterization of hiPSC-derived cardiac fibroblasts transitioning to myofibroblasts
R. Nagalingam, F. Jayousi, … G. F. Tibbits·bioRxiv·Oct 8, 2023
- Heterogeneity and Functional Analysis of Cardiac Fibroblasts in Heart Development
Yiting Deng, Yuanhang He, … Guang Li·bioRxiv·Jul 30, 2023
- Mechanical history shapes phenotypic plasticity and fibroblast-autonomous 3D remodeling in iPSC-derived cardiac fibroblasts
Huanzhu Jiang, Ganesh Malayath, … Nathaniel Huebsch·bioRxiv·Oct 25, 2026
- An iPSC-derived bio-inspired scaffold modelling the structure and the effects of extracellular matrix in cardiac fibrosis
Francesco Niro, Soraia Fernandes, … Giancarlo Forte·bioRxiv·Feb 7, 2024