bioRxivGenetics
ZIKA - How Fast Does This Virus Mutate ?
Abstract
The World Health Organisation has declared the present epidemic of infection with the Zika virus to be a Public Health Emergency of International Concern. The virus appears to have spread from Thailand to French Polynesia in 2013, and has since infected over a million people in the countries of South and Central America. In most cases the infection is mild and transient, but the virus does appear to be strongly neurotropic and the presumptive cause of both birth defects in foetuses and Guillain-Barre syndrome in some adults.\n\nIn this paper the techniques and utilities developed in the study of mitochondrial DNA are applied to the Zika virus. As a result it is possible to show in a simple manner how a phylogenetic tree may be constructed and how the mutation rate of the virus can be measured.\n\nThe study shows the mutation rate to vary between 12 and 25 bases a year, in a viral genome of 10,272 bases. This rapid mutation rate will enable the geographic spread of the epidemic to be monitored easily and may also prove useful in assisting the identification of preventative measures that are working, and those which are not.
- organism: virus
- assay: DNA methylation
- research focus: phylogenetics / evolution
- approach: statistical model
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Emergence of Zika virus: Direct reversion of mutations and fitness restoration prior to spread to the Americas
J. Liu, Y. Liu, … S. C. Weaver·bioRxiv·Jun 29, 2020
- Single amino acid mutations effect Zika virus replication in vitro and virulence in vivo
N. K. Collette, V. K. Lao, … M. K. Borucki·bioRxiv·Aug 6, 2020
- Genome sequencing reveals Zika virus diversity and spread in the Americas
Hayden C. Metsky, Christian B. Matranga, … Pardis Christine Sabeti·NaturePeer-reviewed·May 23, 2017
- Transmission dynamics of Zika virus in island populations: a modelling analysis of the 2013-14 French Polynesia outbreak
Adam J Kucharski, Sebastian Funk, … Eric J Nilles·bioRxiv·Mar 31, 2016
- Genomic and phenotypic analyses suggest moderate fitness differences among Zika virus lineages
G. Oliveira, C. B. F. Vogels, … K. G. Andersen·bioRxiv·Feb 1, 2022
- Phylogenomics and phylodynamics of Zika Virus from Asia
Kamil Baig, Shazia Farah, Ashwin Atkulwar·bioRxiv·Nov 16, 2023