bioRxivGeneticsPreprint
Translation regulation of ATF4 by the termination complex Hbs1-Pelo is required for visual system development and function
Katherine E. Querry, Inês Lago‐Baldaia, Narayanan Nampoothiri V.P., Christopher Garbark, Abby J. CarneyiD, Vilaiwan M. FernandesiD, Deepika VasudevaniD
Abstract
Inherited retinal diseases are a class of genetically heterogenous disorders characterized by mutations in genes required for retinal function, resulting in progressive loss of vision in human patients. One such deletion mutation in the translation termination factor, HBS1L, results in a suite of developmental anomalies in human patients, including progressive vision loss defects. HBS1L, and its interaction partner Pelota (Pelo), are required for recycling stalled ribosomes on mRNAs, but the specific mRNA target causative of vision defects seen with HBS1L deletion remains unknown. Further, the specific cell types in the visual system that require HBS1L for proper development and function are also unknown. Here, we discover that loss of the Drosophila HBS1L homolog, Hbs1, results in reduced expression of the stress responsive Activating Transcription Factor 4 (ATF4) which is encoded by an mRNA containing multiple upstream open reading frames (uORFs) in its 5 leader. We corroborate these results in cultured human cells, where we find that HBS1L and Pelo promote translation reinitiation at the ATF4 ORF by facilitating proper translation termination at the preceding uORFs. Like human HBS1L deficiency patients, loss of function Drosophila mutants for Hbs1, pelo, and ATF4 show vision defects as measured by electroretinograms (ERG). Depleting Hbs1 in lamina neurons replicated the ERG defects seen in Hbs1 mutants, suggesting that Hbs1-Pelo is required for proper lamina neuron function. Further confocal analysis of Hbs1 mutants revealed vacuolization defects in the lamina layer, which are indicative of defective synapse formation between lamina neurons and photoreceptors. Strikingly, restoring ATF4 expression in the lamina partially rescued ERG defects in Hbs1 mutants, indicating that ATF4 is likely a relevant mRNA target regulated by Hbs1-Pelo in these cells. Together, our data support a model wherein Hbs1-Pelo mediated translation regulation of ATF4 in lamina neurons underlies the inherited retinal disease caused by HBS1L deletion.
- organism: Drosophila
- organism: human
- assay: bulk RNA-seq
- research focus: differential expression
- research focus: cell type annotation
- research focus: gene regulatory network inference
- approach: statistical model
- approach: experimental assay
- Citations
- 0
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Genetic deficiency of ribosomal rescue factor HBS1L causes retinal dystrophy associated with Pelota and EDF1 depletion
Shiyu Luo, Bilal K. AlWattar, … Pankaj B. Agrawal·bioRxiv·Oct 18, 2023
- The Endoplasmic Reticulum Proteostasis Regulator ATF6 is Essential for Human Cone Photoreceptor Development
Heike Kroeger, Julia M. D. Grandjean, … Jonathan H. Lin·bioRxiv·Oct 4, 2020
- Her9/HES4 is required for retinal photoreceptor development, maintenance, and survival
Cagney E. Coomer, Stephen G. Wilson, … Ann C. Morris·Scientific ReportsPeer-reviewed·Jul 9, 2020
- Atf6-/- mouse photoreceptors exhibit novel ciliary rootlet defect
Allyssa Bradley, Kristen N. Haggerty, … Jonathan H. Lin·bioRxiv·Feb 19, 2026
- Single cell transcriptomic analyses reveal the impact of bHLH factors ATOH7 and Neurog2 on human retinal organoid development
Xiangmei Zhang, Igor Mandric, … Xian-Jie Yang·bioRxiv·Oct 27, 2020
- Drosophila Aop imposes a delay on E(spl)-mediated repression of Ato during R8 specification.
Adam T. Majot, Lucas M. Jozwick, … Ashok P. Bidwai·bioRxiv·Jun 20, 2019