3D dynamic multiscale force and shape analysis of in-vivo elastic stress sensors
Alejandro JuradoiD, Jonas IsenseeiD, Arne D. HofemeieriD, Lea Johanna KrügeriD, Raphael WittkowskiiD, Ramin GolestanianiD, Philip BittihniD, Timo BetziD
Abstract
The measurement of stresses and forces at the tissue level has proven to be an indispensable tool for the understanding of complex biological phenomena such as cancer invasion, embryo development or wound healing. One of the most versatile tools for force inference at the cell and tissue level are elastic force sensors, whose biocompatibility and tunable material properties make them suitable for many different experimental scenarios. The evaluation of those forces, however, is still a bottleneck due to the numerical methods seen in literature until now, which are usually slow and render low experimental yield. Here we present Bead-Buddy, a ready-to-use platform for the evaluation of deformation and stresses from fluorescently labelled sensors within seconds. The strengths of BeadBuddy lie in the pre-computed analytical solutions of the elastic problem, the abstraction of data into Spherical Harmonics, and a simple user interface that creates a smooth workflow for force inference. O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=174 SRC="FIGDIR/small/633835v3_ufig1.gif" ALT="Figure 1"> View larger version (54K): org.highwire.dtl.DTLVardef@80c95corg.highwire.dtl.DTLVardef@123d712org.highwire.dtl.DTLVardef@1fd1ce0org.highwire.dtl.DTLVardef@72c688_HPS_FORMAT_FIGEXP M_FIG C_FIG
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 6
- FWCI
- 2.98
- Field percentile
- top 9%
- Assay
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Analytical method for reconstructing the stress on a spherical particle from its surface deformation
L. J. Krüger, M. te Vrugt, … R. Wittkowski·bioRxiv·Oct 26, 2023
- Live 3D imaging and mapping of shear stresses within tissues using incompressible elastic beads
A. SOUCHAUD, A. BOUTILLON, … F. Gallet·bioRxiv·May 10, 2021
- STRESS, an automated geometrical characterization of deformable particles for in vivo measurements of cell and tissue mechanical stresses
B. Gross, E. Shelton, … O. Campas·bioRxiv·Mar 26, 2021
- Polyacrylamide Bead Sensors for in vivo Quantification of Cell-Scale Stress in Zebrafish Development
N. Traeber, K. Uhlmann, … J. Guck·bioRxiv·Sep 18, 2018
- A non-invasive approach to study localized forced in 3D epithelia
Niels Gouirand, Meti Ibrahimi, … Elsa Bazellières·bioRxiv·Oct 23, 2026
- Standardized microgel beads as elastic cell mechanical probes
S. Girardo, N. Traeber, … J. Guck·bioRxiv·Mar 28, 2018