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Systems BiologyThe EMBO Journal
Peer-reviewed journal article

Systematic exploration of bacterial form I rubisco maximal carboxylation rates

Benoit de PinsiD, Lior GreenspooniD, Yinon M. Bar‐OniD, Melina ShamshoumiD, Roee Ben-NissaniD, Eliya MilshteiniD, Dan DavidiiD, Itai SharoniD, Oliver Mueller‐CajariD, Εlad NooriD, Ron MiloiD

Abstract

Autotrophy is the basis for complex life on Earth. Central to this process is rubisco - the enzyme that catalyzes almost all carbon fixation on the planet. Yet, with only a small fraction of rubisco diversity kinetically characterized so far, the underlying biological factors driving the evolution of fast rubiscos in nature remain unclear. We conducted a high-throughput kinetic characterization of over 100 bacterial form I rubiscos, the most ubiquitous group of rubisco sequences in nature, to uncover the determinants of rubiscos carboxylation velocity. We show that the presence of a carboxysome CO2 concentrating mechanism correlates with faster rubiscos with a median 5-fold higher rate. In contrast to prior studies, we find that rubiscos originating from -cyanobacteria exhibit the highest carboxylation rates among form I enzymes ({approx}10 s-1 median versus <7 s-1 in other groups). Our study systematically reveals biological and environmental properties associated with kinetic variation across rubiscos from nature.

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