bioRxivBioinformaticsPreprint
BioASQ-QA: A manually curated corpus for Biomedical Question Answering
Anastasia KritharaiD, Anastasios NentidisiD, Konstantinos BougiatiotisiD, Γεώργιος ΠαλιούραςiD
Abstract
The BioASQ question answering (QA) benchmark dataset contains questions in English, along with golden standard (reference) answers and related material. The dataset has been designed to reflect real information needs of biomedical experts and is therefore more realistic and challenging than most existing datasets. Furthermore, unlike most previous QA benchmarks that contain only exact answers, the BioASQ-QA dataset also includes ideal answers (in effect summaries), which are particularly useful for research on multi-document summarization. The dataset combines structured and unstructured data. The material linked with each question comprise documents and snippets, which are useful for Information Retrieval and Passage Retrieval experiments, as well as concepts that are useful in concept-to-text Natural Language Generation. Researchers working on paraphrasing and textual entailment can also measure the degree to which their methods improve the performance of biomedical QA systems. Last but not least, the dataset is continuously extended, as the BioASQ challenge is running and new data are generated.
- Citations
- 6
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Optimizing biomedical information retrieval with a keyword frequency-driven Prompt Enhancement Strategy
Wasim Aftab, Zivkos Apostolou, … Tobias Straub·BMC BioinformaticsPeer-reviewed·Aug 27, 2024
- BioResearchBench: 50 Long Horizon Biological Research Tasks
Samar Abedrabbo, Alex Pryhoda, … Joe Kim·bioRxiv·Nov 3, 2026
- Creating a biomedical knowledge base by addressing GPT inaccurate responses and benchmarking context
Shelby S. Darnell, Rupert W. Overall, … Pjotr Prins·Open Research AfricaPeer-reviewed·Sep 2, 2025
- Bridging The Evolving Semantics: A Data Driven Approach to Knowledge Discovery In Biomedicine
Kishlay Jha·bioRxiv·Sep 5, 2022
- Queryome: Orchestrating Retrieval, Reasoning, and Synthesis across Biomedical Literature
Pranav Punuru, Nabil Ibtehaz, … Daisuke Kihara·Journal of Biomedical SemanticsPeer-reviewed·Aug 12, 2026
- BQsupports: systematic assessment of the support and novelty of new biomedical associations
Adria Fernandez, Martina Locatelli, … Patrick Aloy·bioRxiv·Mar 9, 2023