Pranav Punuru

CryoPilot uses two language model agents to automate cryo-EM structure determination, improving resolution and model accuracy through adaptive decision-making.

PathFold predicts protein folding pathways from sequence using a deep learning framework combining AlphaFold and diffusion models, showing agreement with experimental data.

Queryome is a deep research system that improves biomedical literature synthesis through iterative reasoning and retrieval, achieving higher accuracy than existing methods.

This paper evaluates blind predictions of dynamic water and ion ensembles around RNA using cryo-EM densities from CASP16, finding that molecular dynamics approaches perform best.

NuFold predicts RNA tertiary structures using deep learning with a nucleobase center representation to bridge the gap between sequence data and structural insights.