bioRxivBiophysics
MICLEAR: Intelligent Molecular Cytology for Intraoperative Margin Assessment of Pancreatic Ductal Adenocarcinoma
Abstract
Pancreatic ductal adenocarcinoma (PDAC) is a highly mortal cancer whose only potentially curative treatment is surgical resection. Intraoperative assessment of its surgical margins is vital for patient survival. Frozen-section biopsy is routinely performed for this purpose. However, its high dependence on pathologists experience frequently poses diagnostic discrepancies. The essential invasiveness of PDAC also causes sampling errors. This study developed an intelligent molecular cytology approach with improved diagnostic objectivity and broader sampling coverage. Our method, Multi-Instance Cytology with Learned Raman Embedding (MICLEAR), is characterized by compositional information provided by label-free Raman imaging. First, 4085 cells were brushed off from the pancreases of 41 patients and imaged using stimulated Raman scattering microscopy. Then, a contrastive learning-based cell embedding model was developed to compress each cells morphological and compositional information into a compact cell vector. Finally, a multi-instance learning-based diagnosis model using cell vectors was employed to predict the likelihood of a patients margin being positive. MICLEAR achieved 80% sensitivity, 94.1% specificity, and an AUC of 0.86 on 27 patients for validation, comprising 10 with positive margins and 17 with negative ones, within approximately 8 minutes per patient. It may hold promises for more efficient and accurate intraoperative assessment of PDAC surgical margins.
- organism: human
- assay: imaging
- assay: fluorescence / live-cell microscopy
- research focus: cell type annotation
- research focus: differential expression
- approach: deep learning
- approach: contrastive learning
- approach: machine learning (classical)
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- A prospectively validated machine learning model for the prediction of survival and tumor subtype in pancreatic ductal adenocarcinoma
Georgios A. Kaissis, Sebastian Ziegelmayer, … Rickmer Braren·European Radiology ExperimentalPeer-reviewed·Oct 17, 2019
- DEVELOPMENT OF A CONSENSUS MOLECULAR CLASSIFIER FOR PANCREATIC DUCTAL ADENOCARCINOMA
Pablo Villoslada-Blanco, Lola Alonso, … Núria Malats·Genome MedicinePeer-reviewed·Nov 14, 2025
- Computational discovery of tissue morphology biomarkers in very long-term survivors with pancreatic ductal adenocarcinoma
Jacob S. Sarnecki, Laura DeLong Wood, … Pei-Hsun Wu·bioRxiv·Oct 25, 2017
- A machine learning algorithm predicts molecular subtypes in pancreatic ductal adenocarcinoma with differential response to gemcitabine-based versus FOLFIRINOX chemotherapy
Georgios A. Kaissis, Sebastian Ziegelmayer, … Rickmer Braren·PLoS ONEPeer-reviewed·Oct 2, 2019
- Integrated spatial proteomics of human PDAC uncovers an expanded tumour-immune-stroma spectrum with genomic associations
Noor E. Shakfa, Ferris Nowlan, … Hartland Warren Jackson·bioRxiv·Aug 15, 2025
- Multiplexed Glycan Immunofluorescence Identification of Pancreatic Cancer Cell Subpopulations in Both Tumor and Blood Samples
Braelyn Binkowski, Zachary L. Klamer, … Brian B. Haab·Science AdvancesPeer-reviewed·Mar 7, 2025