bioRxivCancer BiologyPreprint
Power-law Null Model for Bystander Mutations in Cancer
Abstract
In this paper we study Copy Number Variation (CNV) data. The underlying process generating CNV segments is generally assumed to be memory-less, giving rise to an exponential distribution of segment lengths. In this paper, we provide evidence from cancer patient data, which suggests that this generative model is too simplistic, and that segment lengths follow a power-law distribution instead. We conjecture a simple preferential attachment generative model that provides the basis for the observed power-law distribution. We then show how an existing statistical method for detecting cancer driver genes can be improved by incorporating the power-law distribution in the null model.
- organism: human
- assay: whole-genome sequencing
- research focus: variant calling
- approach: statistical model
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- On measuring selection in cancer from subclonal mutation frequencies
I. Bozic, C. Paterson, B. Waclaw·bioRxiv·Jan 24, 2019
- A pan-cancer signature of neutral tumor evolution
Andrea Sottoriva, Trevor Graham·bioRxiv·Feb 11, 2015
- The Poisson process is the universal law of cancer development: driver mutations accumulate randomly, silently, at constant rate and for many decades, likely in stem cells
A. V. Belikov, A. D. Vyatkin, S. V. Leonov·bioRxiv·Nov 7, 2020
- WITER: A powerful method for the estimation of cancer-driver genes using a weighted iterative regression accurately modelling background mutation rate
Lin Jiang, Jingjing Zheng, … Miaoxin Li·bioRxiv·Feb 10, 2019
- Cancer models and statistical analysis of age distribution of cancers
A. N. Tetearing·bioRxiv·Mar 22, 2021
- Accumulation of Oncogenic Mutations During Progression from Healthy Tissue to Cancer
Ruibo Zhang, Ivana Božić·Bulletin of Mathematical BiologyPeer-reviewed·Oct 29, 2024