Nature CommunicationsNeurosciencePeer-reviewed journal article
An integrated resource for functional and structural connectivity of the marmoset brain
Xiaoguang TianiD, Yuyan CheniD, Piotr MajkaiD, Diego SzczupakiD, Yonatan Sanz PerliD, Cecil Chern‐Chyi YeniD, Chuanjun TongiD, Furui FengiD, Haiteng JiangiD, Daniel GleniD, Gustavo DecoiD, Marcello G. P. RosaiD, Afonso C. SilvaiD, Zhifeng LiangiD, Cirong LiuiD
Abstract
Comprehensive integration of structural and functional connectivity data is required to model brain functions accurately. While resources for studying the structural connectivity of non-human primate brains already exist, their integration with functional connectivity data has remained unavailable. Here we present a comprehensive resource that integrates the most extensive awake marmoset resting-state fMRI data available to date (39 marmoset monkeys, 710 runs, 12117 mins) with previously published cellular-level neuronal tracing (52 marmoset monkeys, 143 injections) and multi-resolution diffusion MRI datasets. The combination of these data allowed us to (1) map the fine-detailed functional brain networks and cortical parcellations; (2) develop a deep-learning-based parcellation generator that preserves the topographical organization of functional connectivity and reflects individual variabilities, and (3) investigate the structural basis underlying functional connectivity by computational modeling. This resource will enable modeling structure-function relationships and facilitate future comparative and translational studies of primate brains.
- organism: mouse
- assay: imaging
- research focus: cell type annotation
- research focus: clustering
- research focus: dimensionality reduction
- approach: deep learning
- Citations
- 43
- FWCI
- 4.38
- Field percentile
- top 4%
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Resting State Functional Connectivity of the Marmoset Claustrum
Erin J. Holzscherer, Alessandro Zanini, … David Anthony Seminowicz·Imaging NeurosciencePeer-reviewed·Jan 1, 2025
- Interspecies activation correlations reveal functional correspondences between marmoset and human brain areas
Yuki Hori, Justine C. Cléry, … Stefan Everling·Proceedings of the National Academy of SciencesPeer-reviewed·Sep 7, 2021
- Marmoset Brain Mapping V5: an Anatomical and Connectivity Atlas of the Cerebellum
Xiaojia Zhu, Haotian Yan, … Cirong Liu·Cell ReportsPeer-reviewed·May 1, 2023
- Resting state cerebral networks in mouse lemur primates: from multilevel validation to comparison with humans
Clément M. Garin, Nachiket A. Nadkarni, … Marc Dhénain·NeuroImagePeer-reviewed·Nov 25, 2020
- Functional organization of frontoparietal cortex in the marmoset investigated with awake resting-state fMRI
Yuki Hori, Justine C. Cléry, … Stefan Everling·Cerebral CortexPeer-reviewed·Sep 12, 2021
- Revealing Complex Functional Topology Brain Network Correspondences Between Humans and Marmosets
Q. Li, V. Calhoun, A. Iraji·bioRxiv·Aug 17, 2023