TRACT revisited: an algebraic solution for determining overall rotational correlation times from cross-correlated relaxation rates
Abstract
Accurate rotational correlation times ({tau}c) are critical for quantitative analysis of fast timescale NMR dynamics. As molecular weights increase, the classic derivation of{tau} c using transverse and longitudinal relaxation rates becomes increasingly unsuitable due to the non-trivial contribution of remote dipole-dipole interactions to longitudinal relaxation. Derivations using cross-correlated relaxation experiments, such as TRACT, overcome these limitations but are erroneously calculated in 65% of the citing literature. Herein, we developed an algebraic solutions to the Goldman relationship that facilitate rapid, point-by-point calculations for straightforward identification of appropriate spectral regions where global tumbling is likely to be dominant. The rigid-body approximation of the Goldman relationship has been previously shown to underestimate TRACT-based rotational correlation time estimates. This motivated us to develop a second algebraic solution that employs a simplified model-free spectral density function including an order parameter term that could, in principle, be set to an average backbone S2 {approx} 0.9 to further improve the accuracy of{tau} c estimation. These solutions enabled us to explore the boundaries of the Goldman relationship as a function of the H-N internuclear distance (r), difference of the two principal components of the axially-symmetric 15N CSA tensor ({Delta}{delta}N), and angle of the CSA tensor relative to the N-H bond vector ({theta}). We hope our algebraic solutions and analytical strategies will increase the accuracy and application of the TRACT experiment.
02 /Specification & Classification
Click any tag to browse matching papers- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Correlated dipolar and dihedral fluctuations in a protein
A. Ghosh Moulick, P. J. Chakrabarti·bioRxiv·Jan 28, 2021
- Analysis of Conformational Exchange Processes using Methyl-TROSY-Based Hahn Echo Measurements of Quadruple-Quantum Relaxation
C. A. Waudby, J. Christodoulou·bioRxiv·Apr 11, 2021
- Searching for Correlated Conformational Dynamics: Analysis of the NMR Relaxation Dispersions with Akaike's Information Theory and Hierarchical Clustering
Evgenii L. Kovrigin·bioRxiv·Aug 15, 2017
- Pulsed Third-Spin-Assisted Recoupling NMR for Obtaining Long-Range 13C-13C and 15N-13C Distance Restraints
M. D. Gelenter, A. J. Dregni, M. Hong·bioRxiv·May 20, 2020
- Fitting Force Field parameters to NMR Relaxation Data
F. Kümmerer, S. Orioli, K. Lindorff-Larsen·bioRxiv·Feb 10, 2023
- Rotating Frame Relaxation for Magic Angle Spinning Solid State NMR, A Promising Tool for Characterizing Biopolymer Motion
A. E. McDermott, E. G. Keeler·bioRxiv·Jul 2, 2022