ConfUSIus: an accessible and scalable toolkit for functional ultrasound imaging analysis
Abstract
Functional ultrasound imaging (fUSI) maps brainwide hemodynamics at high resolution, yet analysis requires expert knowledge as pipelines remain fragmented across laboratories. We introduce ConfUSIus, an open-source Python package and graphical interface for accessible, scalable, and reproducible fUSI analysis. Its common data model unifies heterogeneous fUSI recordings across beamformed IQ processing, motion correction, registration, denoising, and statistical analysis. ConfUSIus lowers barriers and facilitates method development, comparison, and sharing.
02 /Specification & Classification
Click any tag to browse matching papers- Assay
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- OfUSA: OpenfUS Analyzer, a versatile open-source framework for the analysis and visualization of functional ultrasound imaging data across animal models
Yun‐An Huang, Théo Lambert, … Alan Urban·bioRxiv·Sep 16, 2025
- Comparison of image registration techniques in functional ultrasound imaging
Shan Zhong, Kofi A. Agyeman, … Vassilios Christopoulos·bioRxiv·Sep 15, 2023
- Agentic transcranial functional ultrasound imaging: @fUS
Zihao CHEN, Zexin Yuan, … Zhihai Qiu·bioRxiv·Sep 28, 2026
- Neural basis of functional ultrasound signals
Anwar O. Núñez-Elizalde, Michael Krumin, … Matteo Carandini·NeuronPeer-reviewed·Mar 11, 2022
- VARS-fUSI: Variable Sampling for Fast and Efficient Functional Ultrasound Imaging using Neural Operators
Bahareh Tolooshams, Lillie L. Lin, … Animashree Anandkumar·bioRxiv·Apr 16, 2025
- Modeling behavior to disentangle motion-related effects in functional ultrasound imaging in awake, head-fixed mice
Chaoyi Qin, Flora Nelissen, … Valeria Gazzola·bioRxiv·Feb 16, 2026