bioRxivPharmacology & ToxicologyPreprint
The pharmacodynamic inoculum effect from the perspective of bacterial population modeling
- Citations
- 7
Abstract
The quantitative determination of the effects of antimicrobials is essential for our understanding of pharmacodynamics and for their rational clinical application. Common pharmacodynamic measures of antimicrobial efficacy, such as the MIC and the pharmacodynamic function, fail to capture the observed dependence of efficacy on the bacterial population size -- a phenomenon called inoculum effect. We assessed the relationship between bacterial inoculum size and pharmacodynamic relationship and determined the consequences of the inoculum effect on bacterial population dynamics with a mathematical multi-hit model that explicitly describes the interaction between antimicrobial molecules with their targets on the bacterial cells. Our model showed that the inoculum effect can arise from the binding dynamics of antimicrobial molecules to bacterial targets alone. A pharmacodynamic function extended by the inoculum effect on its parameters was able to predict the long-term population dynamics of simple scenrios well. More complex scenarios, however, were only captured with by the mechanistically more explicit multi-hit model. In simulations with competing antimicrobial-susceptible and -resistant bacteria, neglecting the inoculum effect led to an overestimation of the competitive ability of the resistant strain. Our work underpins the importance of including the inoculum effect into quantitative pharmacodynamic frameworks, and provides approaches to accomplish that.
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- What's the matter with MICs: The contribution of nutrients and limiting resources to the pharmacodynamics of antibiotics and bacteria
B. A. Berryhill, T. Gil-Gil, … B. R. Levin·bioRxiv·Sep 30, 2022
- Quantifying antibiotic susceptibility and inoculum effects using transient dynamics of Pseudomonas aeruginosa
Sarah A Sundius, Jennifer M. Farrell, … Sam P. Brown·PLoS Computational BiologyPeer-reviewed·Oct 5, 2026
- A biphasic metabolic-growth trade-off governs β-lactam inoculum effects.
Ariane R. Kalifa, Kiran Singh, … Robert Phillip Smith·bioRxiv·Oct 14, 2025
- Inoculum effect of antimicrobial peptides
M. R. Loffredo, F. Savini, … L. Stella·bioRxiv·Aug 21, 2020
- Bistable bacterial growth dynamics in the presence of antimicrobial agents
N. Frenkel, R. Saar Dover, … V. Rom-Kedar·bioRxiv·May 24, 2018
- Mathematical modeling links benefits of short and long antibiotic treatment to details of infection
Erida Gjini, Francisco F. S. Paupério, Vitaly V. Ganusov·Evolution Medicine and Public HealthPeer-reviewed·Jan 1, 2020