Optimized replication of arrayed bacterial mutant libraries increase access to biological resources
J. Willett, A. M. Barnes, D. N. Brunson, A. Lecomte, E. B. Robertson, G. M. Dunny
Abstract
Biological collections, including arrayed libraries of single transposon or deletion mutants, greatly accelerate the pace of bacterial genetics research. Despite the importance of these resources, few protocols exist for the replication and distribution of these materials. Here, we describe a protocol for creating multiple replicates of an arrayed bacterial Tn library consisting of approximately 6,800 mutants in 73 x 96-well plates. Our protocol provides multiple checkpoints to guard against contamination and minimize genetic drift caused by freeze/thaw cycles. This approach can also be scaled for arrayed culture collections of various sizes. Overall, this protocol is a valuable resource for other researchers considering the construction and distribution of arrayed culture collection resources for the benefit of the greater scientific community. ImportanceArrayed mutant collections drive robust genetic screens, yet few protocols exist for replication of these resources and subsequent quality control. Increasing distribution of arrayed biological collections will increase accessibility to and use of these resources. Developing standardized techniques for replication of these resources is essential for ensuring their quality and usefulness to the scientific community.
02 /Specification & Classification
Click any tag to browse matching papers- Organism
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- An Arrayed Transposon Library of Ruegeria pomeroyi DSS-3
C. Mejia, L. Trujillo Rodriguez, … C. Reisch·bioRxiv·Sep 11, 2022
- Biological insights and methodological challenges learned from working with a diverse heterotrophic marine bacterial library
Waseem Bashir Valiya Kalladi, Melisa L. Osborne, … Daniel Sher·bioRxiv·Nov 25, 2025
- Rapid ordering of barcoded transposon insertion libraries of anaerobic bacteria
Anthony L. Shiver, Rebecca Neal Culver, … Kerwyn Casey Huang·Nature ProtocolsPeer-reviewed·May 21, 2021
- Autologous antimicrobials affect transposon library composition
Biwen Wang, Zihao Teng, … Leendert Willem Hamoen·bioRxiv·Aug 27, 2026
- Genomic instability and biofilm determinants in Streptococcus mutans: insights from a sequence-defined arrayed transposon library
Ana Karen Solano Morales, Emanuel Cazano, … Robert Colquhoun Shields·Journal of BacteriologyPeer-reviewed·Jun 22, 2026
- Construction and characterization of a genome-scale ordered mutant collection of Bacteroides thetaiotaomicron
H. A. Arjes, J. Sun, … A. L. Shiver·bioRxiv·Dec 27, 2021