Author

A. L. Shiver

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Microbiology· 4 Bioengineering· 1 Biophysics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 6 Organism:bacteria (other)· 3 Research Focus:cell type annotation· 2 Research Focus:host-pathogen & immune response· 2 Organism:chicken / avian· 1 Organism:E. coli· 1 Assay:electrophysiology· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

A. Deutschbauer· 3 shared K. C. Huang· 3 shared K. Huang· 3 shared C. R. Buie· 2 shared H. K. Carlson· 2 shared H. Liu· 2 shared J. Sun· 2 shared M. Weglarz· 2 shared

Activity by Year

2019-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersMicrobiology

A. Deutschbauer

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

A mutant fitness compendium in Bifidobacteria reveals molecular determinants of colonization and host-microbe interactions

A. L. Shiver, J. Sun, R. Culver, A. Violette, C. Wynter, M. Nieckarz, S. P. Mattiello, P. K. Sekhon, L. Friess, H. K. Carlson, D. Wong, S. K. Higginbottom, M. Weglarz, W. Wang, B. D. Knapp, , K. C. Huang

The paper creates a mutant fitness compendium for Bifidobacterium breve to identify molecular factors affecting colonization and host-microbe interactions.

bioRxiv · Aug 29, 2023 · PreprintMicrobiology

M-TUBE: a fabrication-free microfluidic device for large-volume bacterial electroporation requiring minimal assembly

P.-H. Huang, S. Chen, A. L. Shiver, R. N. Culver, K. Huang, C. R. Buie

The paper introduces a microfluidic device for large-volume bacterial electroporation that outperforms conventional cuvettes and generates a transposon mutant library in Bifidobacterium longum.

bioRxiv · Jan 14, 2022 · PreprintBioengineering

Construction and characterization of a genome-scale ordered mutant collection of Bacteroides thetaiotaomicron

H. A. Arjes, J. Sun, H. Liu, T. H. Nguyen, R. N. Culver, A. I. Celis, S. J. Walton, K. S. Vasquez, F. B. Yu, K. S. Xue, D. P. Newton, R. Zermeno, M. Weglarz, A. Deutschbauer, K. Huang, A. L. Shiver

The paper constructs an ordered mutant collection of Bacteroides thetaiotaomicron using transposon-insertion and barcode sequencing, identifies factors limiting coverage, and demonstrates phenotypic screening for growth defects and cell shape changes.

bioRxiv · Dec 27, 2021Microbiology

Systematic dissection of a complex gut bacterial community

A. G. Cheng, A. Aranda-Diaz, S. Jain, F. Yu, M. Iakiviak, X. Meng, A. Weakley, A. Patil, A. L. Shiver, A. Deutschbauer, N. Neff, K. Huang, M. A. Fischbach

This study constructs a defined gut bacterial community of 104 strains and investigates strain-strain and strain-nutrient interactions through amino acid dropout experiments.

bioRxiv · Jun 15, 2021 · PreprintMicrobiology

Mechanically Resolved Imaging of Bacteria using Expansion Microscopy

Y. Lim, M. Khariton, K. M. Lane, A. L. Shiver, K. M. Ng, S. R. Bray, J. Qin, K. C. Huang, B. Wang

This paper introduces expansion microscopy to distinguish bacterial species and detect phenotypic changes in dense microbial communities.

bioRxiv · Apr 29, 2019Biophysics

Large-scale chemical-genetics of the human gut bacterium Bacteroides thetaiotaomicron

H. Liu, M. N. Price, H. K. Carlson, Y. Chen, J. Ray, A. L. Shiver, C. J. Petzold, K. C. Huang, A. P. Arkin, A. Deutschbauer

This study systematically measures mutant phenotypes for genes in Bacteroides thetaiotaomicron to uncover gene functions and improve understanding of gut microbiota physiology.

bioRxiv · Mar 9, 2019Microbiology