NeuroImageNeurosciencePeer-reviewed journal article
Modelling seeding and neuroanatomic spread of pathology in amyotrophic lateral sclerosis
Sneha PandyaiD, Pedro D. MaiaiD, Benjamin S. FreezeiD, Ricarda Menke, Kevin TalbotiD, Martin R. TurneriD, Ashish RajiD
Abstract
The neurodegenerative disorder amyotrophic lateral sclerosis (ALS) is characterized by the progressive loss of upper and lower motor neurons, with pathological involvement of cerebral motor and, additionally, extra-motor areas, in a clinicopathological spectrum with frontotemporal dementia (FTD). A key unresolved question is whether the distribution of pathology in ALS is driven by molecular factors such as regional gene expression, by differential network vulnerability, or is a combination of both. A system of histopathological staging of ALS based on the regional burden of TDP-43 pathology observed in post mortem brains has been supported to some extent by analysis of distribution of in vivo structural MRI changes. In this paper, computational modelling using a Network Diffusion Model (NDM) was used to investigate whether a process of focal pathological seeding followed by structural network-based spread recapitulated post mortem histopathological staging and, secondly, whether this had any relationship to the pattern of expression of a panel of genes implicated in ALS across the healthy brain. Regionally parcellated T1-weighted MRI data from ALS patients (baseline n=79) was studied in relation to a healthy control structural connectome and a database of associated regional cerebral gene expression. The NDM provided strong support for a structural network-based basis for regional pathological spread in ALS, but no simple relationship to the spatial distribution of ALS-related genes in the healthy brain. Intriguingly, the critical seed regions for spread within the model were not within the primary motor cortex but basal ganglia, thalamus and insula, where NDM recapitulated aspects of the post mortem histopathological staging system. Within the ALS-FTD clinicopathological spectrum, non-primary motor structures may be among the earliest sites of cerebral pathology.
- organism: human
- assay: bulk RNA-seq
- research focus: trajectory inference
- research focus: spatial domain detection
- research focus: differential expression
- research focus: gene regulatory network inference
- approach: statistical model
- Citations
- 25
- FWCI
- 3.42
- Field percentile
- top 6%
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Network diffusion model predicts neurodegeneration in limb-onset amyotrophic lateral sclerosis
Anjan Bhattarai, Zhaolin Chen, … Gary F. Egan·PLoS ONEPeer-reviewed·Aug 11, 2022
- Network Spreading and Local Biological Vulnerability in Amyotrophic Lateral Sclerosis
Asa Farahani, Justine Y. Hansen, … Bratislav Mišić·Communications BiologyPeer-reviewed·Aug 4, 2025
- Cerebral Atrophy in Amyotrophic Lateral Sclerosis Parallels the Pathological Distribution of TDP43
Mahsa Dadar, Ana Laura Manera, … Sanjay Kalra·Brain CommunicationsPeer-reviewed·Jan 1, 2020
- Multimodal layer modelling reveals in-vivo pathology in ALS
Alicia Northall, Juliane Doehler, … Esther Kuehn·bioRxiv·Jun 28, 2023
- White matter changes in the perforant path in patients with amyotrophic lateral sclerosis
Jeroen Mollink, M. Hiemstra, … A.M. van Cappellen van Walsum·Neuropathology and Applied NeurobiologyPeer-reviewed·Apr 19, 2019
- A multi-omics characterization reveals distinct molecular signatures in the human motor cortex and lumbar spinal cord in ALS
Natalie Barretto, Benjamin T. Fullerton, … Hemali P. Phatnani·bioRxiv·Jul 28, 2026