bioRxivBioengineeringPreprint
Digital twinning of cardiac electrophysiology for congenital heart disease
M. Salvador, F. Kong, M. Peirlinck, D. Parker, H. Chubb, A. Dubin, A. Marsden
Abstract
In recent years, blending mechanistic knowledge with machine learning has had a major impact in digital healthcare. In this work, we introduce a computational pipeline to build certified digital replicas of cardiac electrophysiology in pediatric patients with congenital heart disease. We construct the patient-specific geometry by means of semi-automatic segmentation and meshing tools. We generate a dataset of electrophysiology simulations covering cell-to-organ level model parameters and utilizing rigorous mathematical models based on differential equations. We previously proposed Branched Latent Neural Maps (BLNMs) as an accurate and efficient means to recapitulate complex physical processes in a neural network. Here, we employ BLNMs to encode the parametrized temporal dynamics of in silico 12-lead electrocardiograms (ECGs). BLNMs act as a geometry-specific surrogate model of cardiac function for fast and robust parameter estimation to match clinical ECGs in pediatric patients. Identifiability and trustworthiness of calibrated model parameters are assessed by sensitivity analysis and uncertainty quantification.
- organism: human
- assay: electrophysiology
- research focus: drug response / drug discovery
- research focus: benchmarking
- research focus: cell type annotation
- approach: deep learning
- approach: statistical model
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Calibration and validation strategy for electromechanical cardiac digital twins
Zhinuo Jenny Wang, Maxx Holmes, … Blanca Rodríguez·bioRxiv·Mar 6, 2025
- Probabilistic Cardiac Digital Twins for Robust Patient-Specific Modeling
Dimitris G. Giovanis, K Zhang, … Natalia A. Trayanova·bioRxiv·May 12, 2026
- Large-scale synthetic data enable digital twins of human excitable cells
Pei‐Chi Yang, Mao-Tsuen Jeng, … Colleen E. Clancy·bioRxiv·Sep 3, 2025
- Integrated multi-modal data analysis for computational modeling of healthy and location-dependent myocardial infarction conditions in porcine hearts
Ricardo M. Rosales, Ming Wu, … Esther Pueyo·PLoS Computational BiologyPeer-reviewed·Mar 16, 2026
- Patient-Specific Heart Rate Modulates Developmental Electrophysiology in Transcriptomic-Guided In Silico Models of Pediatric Human Atrial Cardiomyocytes
Gabriella M. Ellks, Mario J. Mendez, … Seth H. Weinberg·bioRxiv·Jul 23, 2026
- Reproducible model development in the Cardiac Electrophysiology Web Lab
Aidan C. Daly, Michael Clerx, … Gary R. Mirams·Progress in Biophysics and Molecular BiologyPeer-reviewed·May 26, 2018