A machine learning based approach to the segmentation of micro CT data in archaeological and evolutionary sciences
Abstract
Segmentation of high-resolution tomographic data is often an extremely time-consuming task and until recently, has usually relied upon researchers manually selecting materials of interest slice by slice. With the exponential rise in datasets being acquired, this is clearly not a sustainable workflow. In this paper, we apply the Trainable Weka Segmentation (a freely available plugin for the multiplatform program ImageJ) to typical datasets found in archaeological and evolutionary sciences. We demonstrate that Trainable Weka Segmentation can provide a fast and robust method for segmentation and is as effective as other leading-edge machine learning segmentation techniques.
02 /Specification & Classification
Click any tag to browse matching papers- Assay
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Deep learning-based segmentation of high-resolution computed tomography image data outperforms commonly used automatic bone segmentation methods
D. M. Patton, E. N. Henning, … T. L. Bredbenner·bioRxiv·Jul 27, 2021
- Segment Anything for Microscopy
Anwai Archit, Luca Freckmann, … Constantin Pape·Nature MethodsPeer-reviewed·Feb 12, 2025
- A New Straightforward Method for Automated Segmentation of Trabecular Bone from Cortical Bone in Diverse and Challenging Morphologies
E. C. Herbst, A. A. Felder, … A. A. Pitsillides·bioRxiv·Mar 2, 2021
- Digitally Deconstructing Leaves in 3D Using X-ray Microcomputed Tomography and Machine Learning
G. Theroux-Rancourt, M. R. Jenkins, … J. M. Earles·bioRxiv·Apr 4, 2020
- Breaking the bottleneck: self-supervised deep learning framework for fully automated fossil CT segmentation
Arindam Roy, Poulami Ghosh, … Richard J. Butler·bioRxiv·Jun 11, 2026
- Automated segmentation of synchrotron-scanned fossils
Melanie A. D. During, Jordan Matelsky, … Thomas B. Schön·Fossil recordPeer-reviewed·Mar 6, 2025