Author

Anwai Archit

University of GöttingenORCID 0009-0002-9533-8620Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Research Focus:clustering· 3 Approach:deep learning· 3 Research Focus:cell type annotation· 2 Assay:imaging· 2 Research Focus:dimensionality reduction· 1 Assay:electronic health records· 1 Organism:human· 1 Organism:mouse· 1

Frequent Co-Authors

Constantin PapeiD· 3 shared Luca FreckmanniD· 2 shared Ananya Kedige RaoiD· 1 shared Andreas R. DengeliD· 1 shared Anika HintzeiD· 1 shared Anna KreshukiD· 1 shared Arrate Muñoz-Barrutia· 1 shared Arsen PetrovićiD· 1 shared

Activity by Year

2025-2025 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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3 shared papersBioinformatics

Constantin PapeORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

SynapseNet: Deep Learning for Automatic Synapse Reconstruction

Sarah Muth, Frederieke Moschref, Luca Freckmann, Sophia Mutschall, Inés Hojas García-Plaza, Julius N. Bahr, Arsen Petrović, Thanh Thao Do, Valentin Schwarze, Anwai Archit, Kirsten Weyand, Susann Michanski, Lydia Maus, Cordelia Imig, Anika Hintze, , Constantin Pape

SynapseNet automatically segments synapses in electron micrographs using deep learning, enabling efficient analysis of synaptic structures.

Molecular Biology of the Cell · Aug 28, 2025Peer-reviewedBioinformatics

FeatureForest: the power of foundation models, theusability of random forests

Mehdi Seifi, Damian E. Dalle Nogare, Juan Manuel Battagliotti, Vera Galinova, Ananya Kedige Rao, Pierre‐Henri Jouneau, Anwai Archit, Fynn Beuttenmueller, Dorothea Dörr, Mariana G. Ferreira, Caterina Fuster-Barceló, Carlos García-López-de-Haro, Estibaliz Gómez-de-Mariscal, Matthew Hartley, Ricardo Henriques, , Joran Deschamps

FeatureForest uses foundation model embeddings with random forests to enable fast, accurate segmentation of complex biological images with minimal labeling.

npj Imaging · Jul 8, 2025Peer-reviewedBioinformatics

Segment Anything for Microscopy

Anwai Archit, Luca Freckmann, Sushmita Nair, Nabeel Khalid, Paul Hilt, Vikas Rajashekar, Marei Freitag, Carolin Teuber, Melanie Spitzner, Constanza Tapia Contreras, Genevieve A. Buckley, Sebastian von Haaren, Sagnik Gupta, Marian Grade, Matthias Wirth, , Constantin Pape

micro_sam finetunes Segment Anything into a light microscopy generalist and a cell/neurite-focused electron microscopy model, plus napari tools for interactive 2d, volumetric and tracking annotation.

Nature Methods · Feb 12, 2025Peer-reviewedBioinformatics✦ In-depth digest