Author

Luca Freckmann

Max Planck Institute for Multidisciplinary SciencesORCID 0000-0002-8285-2586Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:clustering· 2 Approach:deep learning· 2 Research Focus:cell type annotation· 1 Research Focus:dimensionality reduction· 1 Assay:electronic health records· 1 Organism:human· 1 Assay:imaging· 1 Organism:mouse· 1

Frequent Co-Authors

Anwai ArchitiD· 2 shared Constantin PapeiD· 2 shared Andreas R. DengeliD· 1 shared Anika HintzeiD· 1 shared Arsen PetrovićiD· 1 shared Benjamin H. CooperiD· 1 shared Carolin TeuberiD· 1 shared Carolin WichmanniD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersBioinformatics

Anwai ArchitORCID

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2 papers

Recent·Most cited

SynapseNet: Deep Learning for Automatic Synapse Reconstruction

Sarah Muth, Frederieke Moschref, Luca Freckmann, Sophia Mutschall, Inés Hojas García-Plaza, Julius N. Bahr, Arsen Petrović, Thanh Thao Do, Valentin Schwarze, Anwai Archit, Kirsten Weyand, Susann Michanski, Lydia Maus, Cordelia Imig, Anika Hintze, , Constantin Pape

SynapseNet automatically segments synapses in electron micrographs using deep learning, enabling efficient analysis of synaptic structures.

Molecular Biology of the Cell · Aug 28, 2025Peer-reviewedBioinformatics

Segment Anything for Microscopy

Anwai Archit, Luca Freckmann, Sushmita Nair, Nabeel Khalid, Paul Hilt, Vikas Rajashekar, Marei Freitag, Carolin Teuber, Melanie Spitzner, Constanza Tapia Contreras, Genevieve A. Buckley, Sebastian von Haaren, Sagnik Gupta, Marian Grade, Matthias Wirth, , Constantin Pape

micro_sam finetunes Segment Anything into a light microscopy generalist and a cell/neurite-focused electron microscopy model, plus napari tools for interactive 2d, volumetric and tracking annotation.

Nature Methods · Feb 12, 2025Peer-reviewedBioinformatics✦ In-depth digest