Nature CommunicationsSystems BiologyPeer-reviewed journal article
Stem-cell-ubiquitous genes spatiotemporally coordinate division through regulation of stem-cell-specific gene networks
Natalie M. ClarkiD, Eli Buckner, Adam Fisher, Emily C. Nelson, Thomas T. NguyeniD, Abigail R. SimmonsiD, María Angels de Luis BalagueriD, Tiara Butler-Smith, Parnell J. SheldoniD, Dominique C. BergmanniD, Cranos WilliamsiD, Rosangela SozzaniiD
Abstract
Stem cells are responsible for generating all of the differentiated cells, tissues, and organs in a multicellular organism and, thus, play a crucial role in cell renewal, regeneration, and organization. A number of stem cell type-specific genes have a known role in stem cell maintenance, identity, and/or division. Yet, how genes expressed across different stem cell types, referred here as stem-cell-ubiquitous genes, contribute to stem cell regulation is less understood. Here, we find that, in the Arabidopsis root, a stem-cell-ubiquitous gene, TESMIN-LIKE CXC2 (TCX2), controls stem cell division by regulating stem cell-type specific networks. Development of a mathematical model of TCX2 expression allowed us to show that TCX2 orchestrates the coordinated division of different stem cell types. Our results highlight that genes expressed across different stem cell types ensure cross-communication among cells, allowing them to divide and develop harmonically together.
- Citations
- 64
- FWCI
- 7.92
- Field percentile
- top 2%
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Protein complex stoichiometry and expression dynamics of transcription factors modulate stem cell division
N. M. Clark, A. P. Fisher, … R. Sozzani·bioRxiv·Feb 4, 2020
- Exchange of molecular and cellular information: a hybrid model that integrates stem cell divisions and key regulatory interactions
Lisa Van den Broeck, Ryan J. Spurney, … Rosangela Sozzani·Quantitative Plant BiologyPeer-reviewed·Jan 1, 2021
- UNVEILING STEM CELL INDUCTION MECHANISMS FROM SPATIOTEMPORAL CELL-TYPE-SPECIFIC GENE REGULATORY NETWORKS IN POSTEMBRYONIC ROOT ORGANOGENSIS
Javier Cabrera, Álvaro Sánchez-Corrionero, … Miguel Á. Moreno-Risueno·bioRxiv·Jun 13, 2024
- Elucidating the role of multiple feedback loops in regulating stem cell decisions
Razeen Shaikh, Gregory T. Reeves·bioRxiv·Sep 25, 2024
- Stem cell homeostasis in the root of Arabidopsis involves cell-type specific complex formation of key transcription factors
Vivien I. Strotmann, Monica L. García‐Gómez, Yvonne Stahl·EMBO ReportsPeer-reviewed·Mar 19, 2025
- Comprehensive integration of single-cell transcriptomic data illuminates the regulatory network architecture of plant cell fate specification
Shanni Cao, Xue Fei Zhao, … Chao He·Acta Botanica YunnanicaPeer-reviewed·Apr 3, 2024