bioRxivBioinformatics
BioWardrobe: an integrated platform for analysis of epigenomics and transcriptomics data
Abstract
BioWardrobe is an integrated platform that empowers users to store, visualize and analyze epigenomics and transcriptomics data, without the need for programming expertise, by using a biologist-friendly webbased user interface. Predefined pipelines automate download of data from core facilities or public databases, calculate RPKMs and identify peaks and display results via the interactive web interface. Additional capabilities include analyzing differential gene expression and DNA-protein binding and creating average tag density profiles and heatmaps.
- assay: ChIP-seq
- assay: bulk RNA-seq
- research focus: clustering
- research focus: differential expression
- approach: experimental assay
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