Liya Wang

AtlasXplore provides a web platform for visualizing and sharing spatial epigenome data, enabling interactive exploration without requiring advanced computational skills.

The paper introduces AtlasXbrowser, a tool for processing DBiT image data to extract spatial information for integration with sequencing data.

The paper generates a large-scale genomic resource of sorghum EMS mutants, identifying disruptive mutations in over 15,500 genes and making data accessible via BSAseq integration and a web tool.

This study constructs high-quality sorghum genome assemblies and identifies structural variations and resistance genes associated with sugarcane aphid resistance.

BSAseq identifies causal mutations in bulked F2 populations using a probabilistic model and interactive web tool.

The paper describes the development of a cloud-based platform for managing, analyzing, and distributing MaizeCODE data, enhancing reproducibility and accessibility.

The paper develops a tool for haplotype phasing and expression analysis in maize using single-molecule long-read sequencing, revealing allele-specific and imprinted gene expression.

The paper identifies poorly annotated genes in maize using a double triage approach combining quality metrics and gene tree visualization, revealing 4,000 novel annotations.

The paper proposes a distributed bioinformatics platform using iRODS and iPlant Agave API for genomic analysis, validated with a Genome-Wide Association Study workflow.

The paper presents a GWAS platform using iPlant cyber-infrastructure for managing and analyzing large genotype and phenotype datasets with customizable workflows.