bioRxivBioinformaticsPreprint
COVID-3D: An online resource to explore the structural distribution of genetic variation in SARS-CoV-2 and its implication on therapeutic development
Stephanie PortelliiD, Moshe OlshanskyiD, Carlos H. M. RodriguesiD, Elston N. D’SouzaiD, Yoochan MyungiD, Michael A. SilkiD, Azadeh AlaviiD, Douglas E. V. PiresiD, David Benjamin AscheriD
Abstract
The emergence of the COVID-19 pandemic has spurred a global rush to uncover basic biological mechanisms, to inform effective vaccine and drug development. Despite viral novelty, global sequencing efforts have already identified genomic variation across isolates. To enable easy exploration and spatial visualization of the potential implications of SARS-CoV-2 mutations on infection, host immunity and drug development we have developed COVID-3D (http://biosig.unimelb.edu.au/covid3d/).
- Citations
- 6
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- SARS2Mutant: SARS-CoV-2 Amino-Acid Mutation Atlas Database
Karim Rahimian, Ehsan Arefian, … Youping Deng·NAR Genomics and BioinformaticsPeer-reviewed·Mar 29, 2023
- Mutational signatures in countries affected by SARS-CoV-2: Implications in host-pathogen interactome
Jasdeep Singh, H. Singh, … Syed Asad Rahman·bioRxiv·Sep 17, 2020
- COVID-19 Variants Database: A repository for Human SARS-CoV-2 Polymorphism Data
Allah Rakha, Haroon Rasheed, … Jiang Du·bioRxiv·Jun 10, 2020
- CoV3D: A database and resource for high resolution coronavirus protein structures
R. Gowthaman, J. D. Guest, … B. G. Pierce·bioRxiv·May 12, 2020
- Genomic, geographic and temporal distributions of SARS-CoV-2 mutations
H.-C. Yang, C.-h. Chen, … J. C. Liao·Proceedings of the National Academy of SciencesPeer-reviewed·Nov 12, 2020
- Monitoring for SARS-CoV-2 drug resistance mutations in broad viral populations
Mayya Sedova, Lukasz Jaroszewski, … Adam Godzik·bioRxiv·May 27, 2022