Automatic Tracing of Ultra-Volume of Neuronal Images
Hanchuan PengiD, Zhi ZhouiD, Erik H. W. MeijeringiD, Ting ZhaoiD, Giorgio A. AscoliiD, Michael HawrylycziD
Abstract
Despite substantial advancement in the automatic tracing of neurons' morphology in recent years, it is challenging to apply the existing algorithms to very large image datasets containing billions or more voxels. We introduce UltraTracer, a solution designed to extend any base neuron-tracing algorithm to be able to trace virtually unlimited data volumes. We applied this approach to neuron-tracing algorithms with completely different design principles and tested on challenging human and mouse neuron datasets that have hundreds of billions of voxels. Results indicate that UltraTracer is scalable, accurate, and about 3 to 6 times more efficient compared to other state-of-the-art approaches.
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 77
- FWCI
- 6.41
- Field percentile
- top 2%
- Organism
- Assay
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Automated 3D Neuron Tracing with Precise Branch Erasing and Confidence Controlled Back-Tracking
Siqi Liu, Donghao Zhang, … Weidong Cai·IEEE Transactions on Medical ImagingPeer-reviewed·May 4, 2018
- Automated Neuron Tracing with Imitation Learning
Bryson Gray, Daniel Jacob Tward·bioRxiv·Aug 4, 2026
- Artificial neural network filters for enhancing 3D optical microscopy images of neurites
Shih-Luen Wang, Seyed Mostafa Mousavi Kahaki, Armen Stepanyants·SPIE Medical Imaging: Image ProcessingPeer-reviewed·Mar 14, 2019
- DeepNeuron: An Open Deep Learning Toolbox for Neuron Tracing
Zhi Zhou, Hsien-Chi Kuo, … Fuhui Long·Brain InformaticsPeer-reviewed·Jun 6, 2018
- TraceMontage: a Method for Merging Multiple Independent Neuronal Traces
Aslan S. Dizaji, Logan A. Walker, Dawen Cai·Journal of Neuroscience MethodsPeer-reviewed·Dec 23, 2019
- Fast, Efficient, and Accurate Neuro-Imaging Denoising via Deep Learning
Shivesh Chaudhary, Sihoon Moon, Hang Lu·bioRxiv·Apr 13, 2022