Author

Siqi Liu

The University of SydneyORCID 0000-0002-4675-5498Unclaimed ORCID profile · follow to get notified of new preprints

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Siqi Liu3 papers · Jianghan University

Biology Disciplines

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Bioinformatics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Assay:imaging· 2 Research Focus:benchmarking· 1 Approach:experimental assay· 1 Organism:multiple species· 1 Approach:statistical model· 1

Frequent Co-Authors

Hanchuan PengiD· 2 shared Weidong CaiiD· 2 shared Alessandro BriaiD· 1 shared Aljoscha NerniD· 1 shared Amos Sironi· 1 shared Ann‐Shyn ChiangiD· 1 shared Arvind RamanathaniD· 1 shared Badrinath RoysamiD· 1 shared

Activity by Year

2018-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Hanchuan PengORCID

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2 papers

Recent·Most cited

BigNeuron: A resource to benchmark and predict best-performing algorithms for automated reconstruction of neuronal morphology

Linus Manubens-Gil, Zhi Zhou, Hanbo Chen, Arvind Ramanathan, Xiaoxiao Liu, Yufeng Liu, Alessandro Bria, Todd A. Gillette, Zongcai Ruan, Jian Wu Yang, Miroslav Radojević, Ting Zhao, Li Cheng, Lei Qu, Siqi Liu, , Hanchuan Peng

BigNeuron benchmarks automatic neuron reconstruction algorithms using gold standard annotations and image quality metrics, showing that consensus methods outperform individual algorithms.

Nature Methods · Apr 17, 2023Peer-reviewedBioinformatics

Automated 3D Neuron Tracing with Precise Branch Erasing and Confidence Controlled Back-Tracking

Siqi Liu, Donghao Zhang, Yang Song, Hanchuan Peng, Weidong Cai

This paper introduces an algorithm for automated 3D neuron reconstruction that improves performance through confidence-controlled back-tracking and accurate area estimation, achieving state-of-the-art results on benchmark datasets.

IEEE Transactions on Medical Imaging · May 4, 2018Peer-reviewedNeuroscience