Frontiers in Network PhysiologyBioengineeringPeer-reviewed journal article
Network approach reveals preferential T-cell and macrophage association with α-linked β-cells in early stage of insulitis in NOD mice.
Nirmala Vasan BalasenthilkumaraniD, Jennifer C. WhiteselliD, Laura PyleiD, Rachel Sharon FriedmaniD, Vira V. KravetsiD
Abstract
One of the challenges in studying islet inflammation - insulitis - is that it is a transient phenomenon. Traditional reporting of the insulitis progression is based on cumulative, donor-averaged values of leucocyte density in the vicinity of pancreatic islets, that hinders intra- and inter-islet heterogeneity of disease progression. Here, we aimed to understand why insulitis is non-uniform, often with peri-insulitis lesions formed on one side of an islet. To achieve this, we demonstrated applicability of network theory in detangling intra-islet multi-cellular interactions during insulitis. Specifically, we asked the question "what is unique about regions of the islet which interact with immune cells first". This study utilized the non-obese diabetic mouse model of type one diabetes and examined the interplay among -, {beta}-, T-cells, myeloid cells, and macrophages in pancreatic islets during the progression of insulitis. Disease evolution was tracked based on T/{beta} cell ratio in individual islets. In the early stage, we found that immune cells are preferentially interacting with -cell-rich regions of an islet. At the islet periphery -linked {beta}-cells were found to be targeted significantly more compared to those without -cell neighbors. Additionally, network analysis revealed increased T-myeloid, and T-macrophage interactions with all {beta}-cells.
- organism: mouse
- assay: bulk RNA-seq
- research focus: cell-cell communication
- research focus: clustering
- research focus: differential expression
- research focus: cell type annotation
- approach: statistical model
- approach: graph neural network
- Citations
- 5
- FWCI
- 1.05
- Field percentile
- top 27%
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