bioRxivNeurosciencePreprint
HortaCloud: An Open and Collaborative Platform for Whole Brain Neuronal Reconstructions
Konrad RokickiiD, David SchauderiD, Donald J. OlbrisiD, Cristian GoinaiD, Jody ClementsiD, Patrick Edson, Takashi KawaseiD, Robert SvirskasiD, Cameron ArshadiiD, David H. FengiD, Jayaram V. ChandrashekariD, Tiago FerreiraiD, MouseLight Project Team
- Citations
- 3
Abstract
HortaCloud is a cloud-based, open-source platform designed to facilitate the collaborative reconstruction of long-range projection neurons from whole-brain light microscopy data. By providing virtual environments directly within the cloud, it eliminates the need for costly and time-consuming data downloads, allowing researchers to work efficiently with terabyte-scale volumetric datasets. Standardization of computational resources in the cloud make deployment easier and more predictable. The pay-as-you-go cloud model reduces adoption barriers by eliminating upfront investments in expensive hardware. Finally, HortaClouds decentralized architecture enables global collaboration between researchers and between institutions.
- assay: imaging
- research focus: database / resource
- research focus: software / tool
- approach: experimental assay
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Collaborative Augmented Reconstruction for Scaled Production of 3D Neuron Morphology in Mouse and Human Brains
Lingli Zhang, Lei Huang, … Hanchuan Peng·bioRxiv·Oct 6, 2023
- CloudBrain: Online neural computation in the cloud
Leon Bonde Larsen, Rasmus Karnøe Stagsted, … Anders Lyhne Christensen·bioRxiv·Jan 21, 2021
- Recut: a Concurrent Framework for Sparse Reconstruction of Neuronal Morphology
Karl Marrett, Muye Zhu, … Jason Cong·bioRxiv·Dec 7, 2021
- Multiscale Cloud-based Pipeline for Neuronal Electrophysiology Analysis and Visualization
Jinghui Geng, Kateryna Voitiuk, … Mircea Teodorescu·ArrayPeer-reviewed·Jun 19, 2026
- MorphoHub: A Platform for Petabyte-Scale Multi-Morphometry Generation
Shengdian Jiang, Yimin Wang, … Hanchuan Peng·bioRxiv·Jan 9, 2021
- Dense reconstruction of brain-wide neuronal population close to the ground truth
Zhou Hang, Li Shiwei, … Zeng Shaoqun·bioRxiv·Jan 2, 2018