bioRxivPlant BiologyPreprint
plantMASST - Community-driven chemotaxonomic digitization of plants
Paulo Wender Portal GomesiD, Helena Mannochio-RussoiD, Robin SchmidiD, Simone ZuffaiD, Tito DamianiiD, Luis-Manuel Quirós-GuerreroiD, Andrés Mauricio Caraballo‐RodrígueziD, Haoqi Nina ZhaoiD, Heejung YangiD, Shipei XingiD, Vincent Charron‐LamoureuxiD, Desnor N. ChigumbaiD, Brian E. SedioiD, Jonathan A. MyersiD, Pierre‐Marie AllardiD, Thomas V. HarwoodiD, Giselle Tamayo‐CastilloiD, Kyo Bin KangiD, Emmanuel DéfosseziD, Héctor H. F. KooleniD, M. N. da SilvaiD, Consuelo Yumiko Yoshioka e SilvaiD, Sergio RasmanniD, Tom W. N. WalkeriD, Gaétan GlauseriD, , Pieter C. DorresteiniD
Abstract
Understanding the distribution of hundreds of thousands of plant metabolites across the plant kingdom presents a challenge. To address this, we curated publicly available LC-MS/MS data from 19,075 plant extracts and developed the plantMASST reference database encompassing 246 botanical families, 1,469 genera, and 2,793 species. This taxonomically focused database facilitates the exploration of plant-derived molecules using tandem mass spectrometry (MS/MS) spectra. This tool will aid in drug discovery, biosynthesis, (chemo)taxonomy, and the evolutionary ecology of herbivore interactions.
- organism: plant (other)
- assay: metabolomics
- research focus: database / resource
- approach: experimental assay
- Citations
- 28
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- PCMD: A Multilevel Comparison Database of Intra- and Cross-species Metabolic Profiling in 530 Plant Species
Yue Hu, Yao Ruan, … Qingyong Yang·Plant CommunicationsPeer-reviewed·Jul 11, 2024
- Defining the limits of plant chemical space: challenges and estimations
Chloe Engler Hart, Yojana Gadiya, … Daniel Domingo‐Fernándéz·GigaSciencePeer-reviewed·Jan 1, 2025
- MASST: A Web-based Basic Mass Spectrometry Search Tool for Molecules to Search Public Data.
Mingxun Wang, Alan K. Jarmusch, … Pieter C. Dorrestein·bioRxiv·Mar 28, 2019
- Spec2Class: Accurate Prediction of Plant Secondary Metabolite Class using Deep Learning
Victoria Poltorak, Nir Shachaf, … David Zeevi·bioRxiv·Mar 17, 2024
- MagnoliidsGDB：An integrated functional genomics database for Magnoliids
Yayu Chen, Zhuang Yang, … Yuanhao Ding·Plant CommunicationsPeer-reviewed·Jan 23, 2025
- Comprehensive mass spectrometry-guided plant specialized metabolite phenotyping reveals metabolic diversity in the cosmopolitan plant family Rhamnaceae
K. B. Kang, M. Ernst, … P. C. Dorrestein·bioRxiv·Nov 7, 2018