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Systems BiologyMolecular Systems Design & Engineering
Peer-reviewed journal article

Learning-accelerated Discovery of Immune-Tumour Interactions

Jonathan OzikiD, Nicholson T. CollieriD, Randy W. HeilandiD, Gary C. AniD, Paul MackliniD

Abstract

We present an integrated framework for enabling dynamic exploration of design spaces for cancer immunotherapies with detailed dynamical simulation models on high-performance computing resources. Our framework combines PhysiCell, an open source agent-based simulation platform for cancer and other multicellular systems, and EMEWS, an open source platform for extreme-scale model exploration. We build an agent-based model of immunosurveillance against heterogeneous tumours, which includes spatial dynamics of stochastic tumour-immune contact interactions. We implement active learning and genetic algorithms using high-performance computing workflows to adaptively sample the model parameter space and iteratively discover optimal cancer regression regions within biological and clinical constraints.

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