Genomics Proteomics & BioinformaticsGenetic & Genomic MedicinePeer-reviewed journal article
An Integrative Polygenic and Epigenetic Risk Score for Overweight-Related Hypertension in Chinese Population
Yaning Zhang 张亚宁iD, Qiwen Zheng 郑启文iD, Qili QianiD, Na YuaniD, Tianzi LiuiD, Xingjian GaoiD, Xiu FaniD, Youkun BiiD, Guangju JiiD, Peilin JiaiD, Sijia WangiD, Fan Liu 刘凡iD, Changqing ZengiD
Abstract
Overweight-related hypertension (OrH), defined by the coexistence of excess body weight and hypertension (HTN), is an increasing health concern elevating cardiovascular disease risks. This study evaluates the prediction performance of polygenic risk scores (PRS) and methylation risk scores (MRS) for OrH in 7,605 Chinese participants from two cohorts: the Chinese Academy of Sciences (CAS) and the National Survey of Physical Traits (NSPT). In CAS cohort, which predominantly consists of academics, males showed significantly higher prevalence of obesity, hypertension (HTN), and OrH, along with worse metabolic syndrome indicators, compared to females. This disparity was less pronounced in NSPT cohort and in broader Chinese studies. Among ten PRS methods, PRScsx was the most effective, enhancing prediction accuracy for obesity (AUC = 0.75), HTN (AUC = 0.74), and OrH (AUC = 0.75), compared to baseline models using only age and sex (AUC = 0.55-0.71). Similarly, Lasso-based MRS models improved prediction accuracies for obesity (AUC = 0.70), HTN (AUC = 0.73), and OrH (AUC = 0.78). Combining PRS and MRS further boosted prediction accuracy to the AUC of 0.77, 0.76, and 0.80, respectively. These models stratified individuals into high (> 0.6) or low (< 0.1) risk categories, covering 59.95% for obesity, 31.75% for HTN, and 43.89% for OrH, respectively. Our findings highlight a higher OrH risk among male academics, emphasize the influence of metabolic and lifestyle factors on MRS predictions, and highlight the value of multi-omics approaches in enhancing risk stratification. HighlightsPolygenic risk scores and methylation risk scores were systematically evaluated in predicting the risk of obesity, hypertension, and overweight related hypertension in Chinese participants. PRScsx demonstrated robust accuracy in PRS profiling, while Lasso-based MRS showed superior performance in MRS profiling. Moreover, integrating multi-omics analyses further improved disease risk profiling for these conditions, highlighting their potential for personalized care and prevention strategies. Gender disparity in the prevalence of metabolism-related disorders largely changed in recent three decades in China. Male to female prevalence ratio for obesity, hypertension, and overweight related hypertension reached striking high as 3.8, 2.9 and 4.7 among academics. These differences are likely influenced by the complex interplay among epigenetic factors, lifestyle and metabolic health.
- organism: human
- assay: GWAS summary statistics
- assay: DNA methylation
- research focus: benchmarking
- research focus: differential expression
- research focus: gene regulatory network inference
- approach: statistical model
- approach: machine learning (classical)
- Citations
- 1
- FWCI
- 0.58
- Field percentile
- top 37%
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- A multi-ethnic polygenic risk score is associated with hypertension prevalence and progression throughout adulthood
Nuzulul Kurniansyah, Matthew O. Goodman, … Tamar Sofer·Nature CommunicationsPeer-reviewed·Jun 21, 2022
- Improving performance of polygenic risk scores for hypertension across two ancestry groups.
Marguerite R. Irvin, Vinodh Srinivasasainagendra, … Hemant K. Tiwari·PLoS ONEPeer-reviewed·Jul 24, 2026
- Pathway-Specific Polygenic Risk Scores for Blood Pressure Traits in a West African Cohort
Gregory Bormes, Vanessa Robbin, … Bamidele O. Tayo·Frontiers in Cardiovascular MedicinePeer-reviewed·Mar 13, 2026
- A multi-ancestry polygenic risk score for body mass index predicts longitudinal weight change
Tianyuan Lu, Lily N. Stalter, … Luke M. Funk·Genome MedicinePeer-reviewed·Aug 5, 2026
- A 6-CpG Validated Methylation Risk Score Model for Metabolic Syndrome: The HyperGEN and GOLDN Studies
Bertha Hidalgo, Bré Minniefield, … Marguerite R. Irvin·PLoS ONEPeer-reviewed·Nov 15, 2021
- A polygenic and phenotypic risk prediction for Polycystic Ovary Syndrome evaluated by Phenome-wide association studies
Yoonjung Yoonie Joo, Ky’Era V. Actkins, … Corrine Kolka Welt·The Journal of Clinical Endocrinology & MetabolismPeer-reviewed·Jan 9, 2020