bioRxivDevelopmental BiologyPreprint
Interaction between gene expression and morphokinetic parameters in undisturbed human embryo culture
Hui XiaoiD, Adam StevensiD, Helen SmithiD, Karolina Szczęsna, Maria KeramariiD, Greg Horne, András DinnyésiD, Susan J. KimberiD, Píetro LióiD, Daniel R. BrisoniD
Abstract
The clinical in vitro fertilisation (IVF) need for optimal culture conditions and improved selection of human embryos for transfer led to the development of time-lapse systems built into incubators to allow a stable, well-defined and undisturbed culture environment with continual monitoring of embryo development. Clinical data suggest that both undisturbed culture of embryos and selection algorithms based on time-lapse morphometric parameters can potentially improve embryo development and live birth rates. However, there remains a need to validate and understand the mechanisms underlying the potential benefits of the time-lapse technology in IVF. In this study, we compared the gene expression of human embryos grown in an undisturbed time-lapse system with a conventional incubator and showed that there is no fundamental difference in the developmental program of the undisturbed embryos, which provides important reassurance concerning the time-lapse technology. We then performed a network-based integrative analysis based on the undisturbed blastocyst transcriptomes and identified time-lapse parameter correlated genes. These showed cross talk with identified embryo development gene functional modules, suggesting potential molecular mechanisms underlying the clinical predictive capabilities of embryo time-lapse morphokinetic parameters for subsequent live birth. This study suggests methodologies for assessing the impact of additional predictive correlates of value for optimal embryo development and understanding their mechanisms of action.
- organism: human
- assay: bulk RNA-seq
- research focus: differential expression
- research focus: gene regulatory network inference
- approach: statistical model
- Citations
- 0
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Cross Sectional and Longitudinal Imaging Reveals Spatiotemporal Divergence in Morphogenesis and Cell Lineage Specification between in-vivo and in-vitro Mouse Embryo during Pre- and Peri-implantation
Huanhuan Yang·bioRxiv·Jan 5, 2026
- In Vitro Culture Alters Cell Lineage Composition and Cellular Metabolism of Bovine Blastocyst
Hao Ming, Mingxiang Zhang, … Ye Yuan·Biology of ReproductionPeer-reviewed·Feb 26, 2024
- EmbryoTempoFormer: clip-based developmental tempo inference from zebrafish brightfield time-lapse microscopy
Li-Jia-Yu Deng, Pei-Ran Lin, Luo-Tong Xie·Artificial Intelligence in the Life SciencesPeer-reviewed·Apr 12, 2026
- Assessing the influence of distinct IVF culture media on human pre-implantation development using single-embryo transcriptomics
Bastien Ducreux, Julie Barberet, … Patricia Fauque·Frontiers in Cell and Developmental BiologyPeer-reviewed·Jun 26, 2023
- Clocks and Dominoes: Timing Mechanisms of Embryogenesis
Yonghyun Song, Brian Leahy, … Daniel J. Needleman·bioRxiv·Jan 26, 2026
- Transcriptome analysis of human preimplantation embryo reveals expressed waves associated with blastulation failure based on embryonic grade and age