Functional requirements of intentional control over the integrated cortico-thalamo-cortical and basal ganglia systems using neural computations

Large scale brain models encompassing cortico-cortical, thalamo-cortical and basal ganglia processing are fundamental to understand the brain as an integrated system in healthy and disease conditions but are complex to analyze and interpret. Neuronal processes are typically segmented by region and modality in order to explain an experimental observation at a given scale, but integrative frameworks linking scales and modalities are scarce. Here, we present a set of functional requirements used to evaluate the recently developed large-scale brain model against a learning task involving coordinated learning between cortical and sub-cortical systems. The original Information Based Exchange Brain model (IBEx) is decomposed into functionally relevant subsystems, and each subsystem is analyzed and tuned independently and with regard to its relevant functional requirements. Intermediate conclusions are made for each subsystems according to the constraints imposed by these requirements. Subsystems are then re-introduced into the global framework. The relationship between the global framework and phenotypes associated with Huntingtons disease is then discussed and the framework considered in the context of other state-of-the-art integrative brain models.