Topic · Molecular Biology · Biochemistry, Genetics and Molecular Biology
OpenAlex topic; a paper is listed when OpenAlex scores it at least 0.5 for this topic.
38 papers
Gurjit S. Randhawa, Kathleen Allen Hill, Lila Kari A
MLDSP-GUI is an open-source, alignment-free tool for DNA sequence comparison and analysis, offering taxonomic and evolutionary applications.
Chengyuan Wu, Shiquan Ren, Jie Wu, Kelin Xia
The paper introduces the Magnus Representation, an alignment-free method for analyzing genome sequences, and applies it to phylogenetic analysis of viruses and bacteria, confirming known relationships and classifications.
Hannah Franziska Löchel, Dominic Eger, Theodor Sperlea, Dominik Heider
This study compares machine learning methods for protein sequence classification using FCGR encoding, finding that deep neural networks outperform others.
This paper introduces a nonlinear genomic-inspired multiscale bilateral filtering method for short exon prediction, showing significant improvements in exon length prediction across multiple ranges.
Antara Sengupta, Pabitra Pal Choudhury, Hazel Nicolette Manners…·Swarup Roy
The paper investigates whether hub genes and their neighbors in Alzheimer’s disease subnetworks show chemical proximity in DNA sequences and amino acid properties.
Giampaolo Cristadoro, Mirko Degli Esposti, Eduardo G. Altmann
The paper shows symmetry and structure in genetic sequences arise from the same biological processes and presents a model validated on human genomes.
Hideto Mori, Daniel Evans-Yamamoto, Soh Ishiguro…·Nozomu Yachie
The paper introduces SPADE, a software that detects periodic DNA and protein repeats in large genomic datasets with high-throughput and unsupervised methods, outperforming existing tools.
Jayanta Kumar Das, Pabitra Pal Choudhury, Adwitiya Chaudhuri…·Pallab Basu
The paper analyzes the distribution of purines and pyrimidines in miRNAs across human, gorilla, and chimpanzee, identifying non-random patterns and clustering based on quantitative metrics.