Author

Antara Sengupta

University of CalcuttaORCID 0000-0002-0974-9961Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Genomics· 1 Synthetic Biology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Assay:DNA methylation· 3 Research Focus:gene regulatory network inference· 3 Organism:human· 3 Assay:proteomics· 2 Research Focus:benchmarking· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1

Frequent Co-Authors

Pabitra Pal ChoudhuryiD· 3 shared Swarup RoyiD· 2 shared Abhinav K. JainiD· 1 shared Ananya NandyiD· 1 shared Ananya NayakiD· 1 shared Anjali SinghiD· 1 shared Anshul KumariD· 1 shared Anupama KumariiD· 1 shared

Activity by Year

2018-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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3 shared papersBioinformatics

Pabitra Pal ChoudhuryORCID

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5 papers

Recent·Most cited

GenomicsPLoS ONEPeer-reviewedFeb 17, 2021

High throughput detection and genetic epidemiology of SARS-CoV-2 using COVIDSeq next generation sequencing

Rahul C. Bhoyar, Abhinav K. Jain, Paras Sehgal…·Sridhar Sivasubbu

This study evaluates the COVIDSeq protocol for SARS-CoV-2 detection and genetic epidemiology, showing high concordance with RT-PCR and identifying novel variants and lineages.

146 citationstop 1%

whole-genome sequencingexperimental assay

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BioinformaticsbioRxivPreprintJan 11, 2021

An investigation towards understanding the role of CDH1 gene in different types of Breast Cancers

Antara Sengupta, Raja Banerjee

The paper investigates the role of CDH1 gene alterations in breast cancer by analyzing genomic sequences from patients with different breast cancer types.

3 citations

humanwhole-exome sequencing

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BioinformaticsbioRxivPreprintMar 2, 2020

Investigation of Codon Alternation Patterns in Genetic Diseases through Numerical Representation and Codon Classification

Antara Sengupta, Subhadip Chakraborty, Pabitra Pal Choudhury…·Siddhartha S. Jana

The paper investigates codon alteration patterns in two neurodegenerative diseases using numerical representation and classification, finding strong class codons are most mutated and mutations in the first or second positions are more deleterious.

DOI 10.1101/2020.03.02.971036

humanDNA methylation

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Synthetic BiologyIEEE International Conference on Bioinformatics and Biomedicine (BIBM)Peer-reviewedDec 1, 2018

Chemical Characterization of Interacting Genes in Few Subnetworks of Alzheimer’s Disease

Antara Sengupta, Pabitra Pal Choudhury, Hazel Nicolette Manners…·Swarup Roy

The paper investigates whether hub genes and their neighbors in Alzheimer’s disease subnetworks show chemical proximity in DNA sequences and amino acid properties.

3 citations

humanDNA methylation

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Systems BiologybioRxivPreprintOct 2, 2018

Effective Variations of related Physicochemical Properties of Nucleotides Leading to Amino Acids for Characterizing Genes and Proteins

Antara Sengupta, Pabitra Pal Choudhury

The paper quantitatively maps physicochemical properties of DNA sequences to their corresponding amino acid sequences, showing DNA signatures persist through translation.

DOI 10.1101/332171

DNA methylationproteomics

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