Author

A. A. Penin

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 5 Plant Biology· 3

Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 7 Approach:experimental assay· 5 Research Focus:gene regulatory network inference· 4 Organism:plant (other)· 4 Research Focus:cell type annotation· 3 Research Focus:chromatin & epigenetic regulation· 3 Organism:fungi (other)· 2 Approach:statistical model· 2

Frequent Co-Authors

M. D. Logacheva· 6 shared A. S. Kasianov· 4 shared G. A. Bazykin· 4 shared A. S. Kondrashov· 3 shared A. V. Klepikova· 3 shared T. V. Neretina· 3 shared E. S. Gerasimov· 2 shared O. A. Vakhrusheva· 2 shared

Activity by Year

2018-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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6 shared papersPlant Biology

M. D. Logacheva

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Author profile →

8 papers

Recent·Most cited

Origin and diversity of Capsella bursa-pastoris from the genomic point view.

A. A. Penin, A. S. Kasianov, A. V. Klepikova, D. O. Omelchenko, M. S. Makarenko, M. D. Logacheva

This paper presents a chromosome-scale genome assembly and analysis of Capsella bursa-pastoris, revealing no genome dominance and evidence of a single origin through homeologous exchange.

bioRxiv · Jul 13, 2023 · PreprintPlant Biology

High-resolution transcriptome atlas and improved genome assembly of common buckwheat, Fagopyrum esculentum

A. A. Penin, A. S. Kasianov, A. V. Klepikova, I. V. Kirov, E. S. Gerasimov, A. N. Fesenko, M. D. Logacheva

This paper presents a high-resolution transcriptome atlas and improved genome assembly for common buckwheat, revealing TE dynamics and gene candidates related to petaloidy.

bioRxiv · Nov 14, 2020Plant Biology

Transcriptome atlas of Phalaenopsis equestris

A. V. Klepikova, A. S. Kasianov, M. A. Ezhova, A. A. Penin, M. D. Logacheva

The paper presents a transcriptome atlas of Phalaenopsis equestris using RNA-seq, covering 19 organs and provides insights into the expression of orphan genes.

bioRxiv · Nov 3, 2020Plant Biology

Population genomics of two closely related anhydrobiotic midges reveals differences in adaptation to extreme desiccation

N. M. Shaykhutdinov, G. V. Klink, S. K. Garushyants, O. S. Kozlova, A. V. Cherkasov, T. Kikawada, T. Okuda, D. Pemba, R. M. Deviatiiarov, G. R. Gazizova, A. A. Penin, E. I. Shagimardanova, R. Cornette, O. A. Gusev, G. A. Bazykin

This study compares the population genomics of two anhydrobiotic midges, revealing differences in the genetic architecture and adaptation of the PIMT gene family to desiccation.

bioRxiv · Aug 19, 2020Evolutionary Biology

Mitochondrial genome of non-photosynthetic mycoheterotrophic plant Hypopitys monotropa,its structure, gene expression and RNA editing

V. Y. Shtratnikova, M. I. Schelkunov, M. D. Logacheva, A. A. Penin

The paper reports the mitochondrial genome structure, gene expression, and RNA editing in the mycoheterotrophic plant Hypopitys monotropa, revealing unique features compared to photosynthetic relatives.

bioRxiv · Dec 3, 2019Evolutionary Biology

Rapid accumulation of mutations in growing mycelia of a hypervariable fungus Schizophyllum commune

A. V. Bezmenova, E. A. Zvyagina, A. V. Fedotova, A. S. Kasianov, T. V. Neretina, A. A. Penin, G. A. Bazykin, A. S. Kondrashov

The paper measures mutation accumulation in Schizophyllum commune mycelium, finding a high mutation rate per meter of growth compared to other species.

bioRxiv · Sep 24, 2019Evolutionary Biology

Recombination in a natural population of the bdelloid rotifer Adineta vaga

O. A. Vakhrusheva, E. A. Mnatsakanova, Y. R. Galimov, T. V. Neretina, E. S. Gerasimov, S. G. Ozerova, A. O. Zalevsky, I. A. Yushenova, I. R. Arkhipova, A. A. Penin, M. D. Logacheva, G. A. Bazykin, A. S. Kondrashov

This study analyzes the genome of Adineta vaga to show that recombination occurs despite the absence of meiosis, suggesting a mechanism for genetic exchange in asexual populations.

bioRxiv · Dec 17, 2018 · PreprintEvolutionary Biology

Genetics of adaptation of the ascomycetous fungus Podospora anserina to submerged cultivation

O. A. Kudryavtseva, K. R. Safina, O. A. Vakhrusheva, M. D. Logacheva, A. A. Penin, T. V. Neretina, V. N. Moskalenko, E. S. Glagoleva, G. A. Bazykin, A. S. Kondrashov

This study investigates genetic changes in Podospora anserina during adaptation to submerged cultivation, identifying 125 SNVs and 23 indels across eight populations, with evidence of positive selection on genes related to growth and development.

bioRxiv · Dec 6, 2018Evolutionary Biology