Author

A. Alavi

San Francisco State University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Biophysics· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Approach:experimental assay· 1 Organism:human· 1 Research Focus:protein folding & dynamics· 1 Assay:proteomics· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

A. Siddiqui· 1 shared B. Tangeysh· 1 shared C. Stolarczyk· 1 shared D. Cai· 1 shared D. Hornburg· 1 shared Dragutin PetkovićiD· 1 shared E. M. Elgierari· 1 shared H. Xia· 1 shared

Activity by Year

2019-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperBiophysics

A. Siddiqui

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Enhanced competitive protein exchange at the nano-bio interface enables ultra-deep coverage of the human plasma proteome

D. Hornburg, S. Ferdosi, M. Hasan, B. Tangeysh, T. R. Brown, T. Wang, E. M. Elgierari, X. Zhao, A. Alavi, J. Chu, M. Figa, W. Tao, J. Wang, M. Goldberg, H. Xia, , O. C. Farokhzad

The paper develops a method using engineered nanoparticles to enhance plasma proteome coverage by optimizing protein-NP interactions and competition, resulting in deeper and more consistent proteomic profiling.

bioRxiv · Jan 8, 2022 · PreprintBiophysics

RFEX: Simple Random Forest Model and Sample Explainer for non-Machine Learning experts

Dragutin Petković, A. Alavi, D. Cai, J. Yang, Sabiha H Barlaskar

The paper introduces RFEX, a simple Random Forest explainer for non-ML experts, improving model and sample explainability with a tabular output and case study.

bioRxiv · Oct 25, 2019 · PreprintBioinformatics