Author

A. E. Platts

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 2 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 3 Approach:statistical model· 3 Assay:DNA methylation· 2 Organism:plant (other)· 2 Approach:Bayesian inference· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1

Frequent Co-Authors

Z. Joly-Lopez· 2 shared A. Henry· 1 shared A. Johary· 1 shared C. L. Cabral· 1 shared J. K. McKay· 1 shared J. R. Lasky· 1 shared J. Y. Choi· 1 shared L. Lopez· 1 shared

Activity by Year

2019-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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2 shared papersPlant Biology

Z. Joly-Lopez

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Author profile →

3 papers

Recent·Most cited

Nascent transcription and the associated cis-regulatory landscape in rice

J. Y. Choi, A. E. Platts, A. Johary, M. Purugganan, Z. Joly-Lopez

This study identifies transcribed intergenic regions in rice that function as regulatory elements, associated with gene expression and chromatin interactions.

bioRxiv · Jul 6, 2022Plant Biology

Evolutionary systems biology reveals patterns of rice adaptation to drought-prone agro-ecosystems

S. C. Groen, Z. Joly-Lopez, A. E. Platts, M. Natividad, Z. Fresquez, W. M. Mauck, M. R. Quintana, C. L. Cabral, R. O. Torres, R. Satija, M. D. Purugganan, A. Henry

This study uses evolutionary systems biology to identify drought-adaptive traits in rice, revealing gene expression modules linked to drought resistance and fitness.

bioRxiv · May 26, 2021Plant Biology

In the presence of population structure: From genomics to candidate genes underlying local adaptation

N. Price, L. Lopez, A. E. Platts, J. R. Lasky, J. K. McKay

The paper compares mixed linear models and Spearman correlations for identifying SNPs associated with climate, finding that SNPs from both methods are enriched for local adaptation but only GEMMA-associated SNPs show functional constraint and fitness QTL linkage.

bioRxiv · Aug 17, 2019Evolutionary Biology