Author

M. D. Purugganan

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 2 Plant Biology· 2

Signature Assays, Organisms & Methods

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Organism:plant (other)· 3 Approach:statistical model· 3 Assay:whole-genome sequencing· 3 Research Focus:gene regulatory network inference· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:development & morphogenesis· 1

Frequent Co-Authors

J. Y. Choi· 2 shared S. C. Groen· 2 shared A. C. Read· 1 shared A. E. Platts· 1 shared A. Henry· 1 shared A. J. Bogdanove· 1 shared A. V. Zimin· 1 shared C. C. Castillo· 1 shared

Activity by Year

2018-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 15 mutual co-author links

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2 shared papersEvolutionary Biology

J. Y. Choi

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Author profile →

4 papers

Recent·Most cited

Evolutionary systems biology reveals patterns of rice adaptation to drought-prone agro-ecosystems

S. C. Groen, Z. Joly-Lopez, A. E. Platts, M. Natividad, Z. Fresquez, W. M. Mauck, M. R. Quintana, C. L. Cabral, R. O. Torres, R. Satija, M. D. Purugganan, A. Henry

This study uses evolutionary systems biology to identify drought-adaptive traits in rice, revealing gene expression modules linked to drought resistance and fitness.

bioRxiv · May 26, 2021Plant Biology

Genomic history and ecology of the geographic spread of rice

R. M. Gutaker, S. C. Groen, E. S. Bellis, J. Y. Choi, I. S. Pires, R. K. Bocinsky, E. R. Slayton, O. Wilkins, C. C. Castillo, S. Negrao, M. M. Oliveira, D. Q. Fuller, J. A. d. Guedes, J. R. Lasky, M. D. Purugganan

The paper reconstructs the ancient dispersal of rice in Asia and identifies extrinsic factors affecting its genomic diversity.

bioRxiv · Aug 31, 2019Evolutionary Biology

Genome assembly and characterization of a complex zfBED-NLR gene-containing disease resistance locus in Carolina Gold Select rice with Nanopore sequencing

A. C. Read, M. J. Moscou, A. V. Zimin, G. Pertea, R. S. Meyer, M. D. Purugganan, J. E. Leach, L. R. Triplett, S. L. Salzberg, A. J. Bogdanove

The paper uses long-read sequencing to assemble and characterize a complex NLR gene-containing locus in rice, identifying an expanded Xo1 locus with a zfBED domain-containing NLR gene.

bioRxiv · Jun 20, 2019Plant Biology

The complex geography of domestication of the African rice Oryza glaberrima

J. Y. Choi, K. Dorph, M. D. Purugganan

This paper investigates the domestication history of African rice, finding no single origin and suggesting a multi-regional process with admixture and multiple contributing regions.

bioRxiv · May 14, 2018Evolutionary Biology